View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10189_high_1 (Length: 849)

Name: NF10189_high_1
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10189_high_1
NF10189_high_1
[»] chr4 (15 HSPs)
chr4 (539-731)||(21390955-21391147)
chr4 (538-731)||(44275705-44275898)
chr4 (535-733)||(6112627-6112825)
chr4 (539-730)||(3672274-3672466)
chr4 (538-731)||(28093094-28093288)
chr4 (541-731)||(35544911-35545102)
chr4 (539-730)||(49243815-49244006)
chr4 (538-731)||(7217764-7217958)
chr4 (538-730)||(45829256-45829448)
chr4 (539-731)||(46192358-46192551)
chr4 (539-731)||(52191200-52191392)
chr4 (601-725)||(51038768-51038893)
chr4 (599-725)||(54849793-54849919)
chr4 (661-731)||(25437007-25437077)
chr4 (647-725)||(36157840-36157918)
[»] chr1 (13 HSPs)
chr1 (538-730)||(34307136-34307329)
chr1 (538-726)||(2509028-2509217)
chr1 (541-732)||(39249864-39250056)
chr1 (538-730)||(46901733-46901926)
chr1 (538-730)||(28647353-28647545)
chr1 (541-731)||(19258674-19258864)
chr1 (539-712)||(9642866-9643039)
chr1 (607-726)||(29099821-29099939)
chr1 (110-230)||(10418100-10418219)
chr1 (110-213)||(10412374-10412476)
chr1 (647-725)||(10146971-10147049)
chr1 (22-98)||(10417994-10418070)
chr1 (24-95)||(10412273-10412344)
[»] chr2 (14 HSPs)
chr2 (537-731)||(16089821-16090014)
chr2 (538-730)||(33732569-33732761)
chr2 (537-727)||(44958116-44958307)
chr2 (536-730)||(36315561-36315756)
chr2 (542-731)||(3830900-3831087)
chr2 (535-739)||(37498858-37499065)
chr2 (588-731)||(14572994-14573137)
chr2 (537-730)||(6376236-6376424)
chr2 (539-731)||(37914236-37914428)
chr2 (596-730)||(24137149-24137287)
chr2 (539-722)||(41188777-41188961)
chr2 (25-104)||(30633097-30633176)
chr2 (25-104)||(30660826-30660905)
chr2 (22-105)||(30669505-30669588)
[»] chr8 (16 HSPs)
chr8 (537-730)||(30432339-30432532)
chr8 (539-730)||(42162598-42162790)
chr8 (537-730)||(36189216-36189408)
chr8 (538-727)||(18184556-18184745)
chr8 (537-733)||(31318802-31318999)
chr8 (539-731)||(10203663-10203856)
chr8 (537-727)||(12665347-12665539)
chr8 (547-729)||(44081781-44081964)
chr8 (539-724)||(33726017-33726203)
chr8 (537-732)||(43186025-43186220)
chr8 (579-710)||(42668821-42668952)
chr8 (540-682)||(38845023-38845165)
chr8 (639-725)||(31547-31633)
chr8 (539-725)||(3690602-3690788)
chr8 (589-708)||(35849502-35849623)
chr8 (31-72)||(13563200-13563241)
[»] chr7 (26 HSPs)
chr7 (538-730)||(45782658-45782851)
chr7 (539-731)||(36346564-36346756)
chr7 (538-730)||(42220962-42221154)
chr7 (538-733)||(26972201-26972397)
chr7 (538-730)||(28307493-28307686)
chr7 (537-724)||(31148296-31148483)
chr7 (539-732)||(7700476-7700670)
chr7 (538-730)||(34108426-34108619)
chr7 (539-730)||(7699882-7700074)
chr7 (539-730)||(7700080-7700272)
chr7 (539-730)||(7700278-7700470)
chr7 (535-727)||(34828069-34828260)
chr7 (538-730)||(13108148-13108339)
chr7 (537-730)||(5811161-5811354)
chr7 (537-724)||(23980137-23980324)
chr7 (553-730)||(30887700-30887877)
chr7 (591-726)||(21807374-21807509)
chr7 (530-688)||(46475066-46475225)
chr7 (538-709)||(36957450-36957620)
chr7 (581-730)||(15020282-15020428)
chr7 (35-229)||(29625430-29625643)
chr7 (596-725)||(38321014-38321143)
chr7 (601-691)||(20086690-20086780)
chr7 (538-632)||(29953570-29953665)
chr7 (635-688)||(42950109-42950162)
chr7 (537-614)||(42950034-42950111)
[»] chr3 (22 HSPs)
chr3 (535-732)||(43999987-44000185)
chr3 (539-731)||(21559560-21559753)
chr3 (537-731)||(51339781-51339973)
chr3 (539-731)||(36370337-36370530)
chr3 (541-731)||(36749405-36749596)
chr3 (539-731)||(46111943-46112136)
chr3 (540-730)||(22894680-22894870)
chr3 (538-730)||(34749896-34750089)
chr3 (538-731)||(30735494-30735687)
chr3 (539-730)||(38231293-38231484)
chr3 (538-727)||(48200688-48200878)
chr3 (534-733)||(39467096-39467295)
chr3 (632-730)||(29460660-29460758)
chr3 (632-730)||(29471512-29471610)
chr3 (539-732)||(39072278-39072466)
chr3 (601-731)||(50966130-50966256)
chr3 (601-731)||(51069265-51069391)
chr3 (539-722)||(20856153-20856334)
chr3 (535-638)||(29472901-29473004)
chr3 (596-708)||(53638157-53638269)
chr3 (637-723)||(29820397-29820483)
chr3 (31-86)||(1153036-1153091)
[»] scaffold0062 (1 HSPs)
scaffold0062 (539-726)||(6722-6910)
[»] chr5 (22 HSPs)
chr5 (539-730)||(39370927-39371119)
chr5 (539-732)||(13347126-13347320)
chr5 (538-731)||(40887940-40888134)
chr5 (539-731)||(1815619-1815808)
chr5 (539-730)||(2237276-2237468)
chr5 (537-731)||(27553372-27553565)
chr5 (594-732)||(9408094-9408232)
chr5 (538-719)||(14831555-14831737)
chr5 (538-691)||(31800597-31800750)
chr5 (596-733)||(17225316-17225451)
chr5 (539-730)||(19596067-19596258)
chr5 (634-730)||(33404531-33404627)
chr5 (540-731)||(4300544-4300735)
chr5 (538-659)||(42683670-42683792)
chr5 (539-721)||(41003850-41004031)
chr5 (599-733)||(19124532-19124664)
chr5 (22-95)||(35752630-35752703)
chr5 (596-727)||(12164254-12164388)
chr5 (26-98)||(35364670-35364742)
chr5 (22-89)||(35404400-35404467)
chr5 (110-229)||(35404239-35404364)
chr5 (113-177)||(35364567-35364634)
[»] chr6 (7 HSPs)
chr6 (534-731)||(3986900-3987097)
chr6 (538-731)||(3118045-3118239)
chr6 (540-730)||(14022934-14023124)
chr6 (538-730)||(24208444-24208636)
chr6 (538-730)||(13697569-13697760)
chr6 (536-731)||(15345656-15345849)
chr6 (701-731)||(7674598-7674628)
[»] scaffold0043 (1 HSPs)
scaffold0043 (537-726)||(87160-87350)
[»] scaffold0277 (1 HSPs)
scaffold0277 (665-703)||(5943-5981)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 7e-76; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 539 - 731
Target Start/End: Original strand, 21390955 - 21391147
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 638  Q
    |||||||||||| |||||||| ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  21390955 ggaaaaagataggtagacaccctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttacatcatatattcactcattttc 21391054  T
Q  639 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  21391055 atctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctct 21391147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 538 - 731
Target Start/End: Complemental strand, 44275898 - 44275705
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||||||||||||| |||||||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44275898 aggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcatcacccttttt 44275799  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
     ||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  44275798 aatctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataagagctct 44275705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 535 - 733
Target Start/End: Complemental strand, 6112825 - 6112627
Alignment:
Q  535 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 634  Q
    |||||||||||||||| |||||||  ||||||||||||   || ||||||   ||||| |||||||||||| ||||||||||||||||||||||| || |    
T  6112825 aataggaaaaagataggtagacactctttttcatacacttcttatgtacactccatgtattaggggtatttgagtaattttacatcatatcatcatcctt 6112726  T
Q  635 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 733  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  6112725 tttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtataagagctctaa 6112627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 539 - 730
Target Start/End: Complemental strand, 3672466 - 3672274
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||| ||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| |||||||||||||||||| ||||    
T  3672466 ggaaaaagataggtagataccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcacccttttt 3672367  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  3672366 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 3672274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 538 - 731
Target Start/End: Original strand, 28093094 - 28093288
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||| | ||||||||||||   || ||||||  | ||||| |||||||||||| |||| ||||||||||||||||||||| |||    
T  28093094 aggaaaaagataggtagacatcctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtatttttacatcatatcatcaccctttt 28093193  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28093194 tcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 28093288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 541 - 731
Target Start/End: Complemental strand, 35545102 - 35544911
Alignment:
Q  541 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattttca 639  Q
    |||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||||||| |||||||||||||||||||||||||| |||| |    
T  35545102 aaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaattttacatcatatcatcaccccttttta 35545003  T
Q  640 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    | ||||||||||||||||||| ||||| |||||||||| ||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  35545002 tatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtataccacctaagatggttcatgtataagagctct 35544911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 539 - 730
Target Start/End: Complemental strand, 49244006 - 49243815
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 638  Q
    |||||||||||  |||||| | |||||||||||||  || ||||||   ||||| |||||||||||||||||||||||||||||||||||||   ||||     
T  49244006 ggaaaaagatatgtagacatcctttttcatacacctcttatgtacactccatgtattaggggtattttagtaattttacatcatatcatcactttttttt 49243907  T
Q  639 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 49243815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 538 - 731
Target Start/End: Complemental strand, 7217958 - 7217764
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| || ||||| |||||||||||||  || |||||| | ||||||||||  |||||||||||||||||||||||||||||||||| |||    
T  7217958 aggaaaaagataggtaaacaccctttttcatacacctcttatgtacaccctcatgtgttataggtattttagtaattttacatcatatcatcaccctttt 7217859  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    | ||||||| ||| |||||||||| |||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||    
T  7217858 ttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataagagctct 7217764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 538 - 730
Target Start/End: Original strand, 45829256 - 45829448
Alignment:
Q  538 aggaaaaagatagatagacacc-ttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||||| |||||| ||||||| ||| |||||| | ||| ||  |||||||||||| | |||| |||||| || ||||||| |||    
T  45829256 aggaaaaagataggtagacacccttttttgatacacc-tttatgtacaccccatatgccaggggtattttaatcatttcacatcacattatcaccccttt 45829354  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    | |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  45829355 ttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataagagctc 45829448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 539 - 731
Target Start/End: Complemental strand, 46192551 - 46192358
Alignment:
Q  539 ggaaaaagatagatagacacc-ttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||||| |||||| |||||||  || |||||| | |||||   |||||||||||| | |||| |||||| || ||||||| ||||    
T  46192551 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtaccaggggtattttaatcatttcacatcacattatcacccctttt 46192452  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
     |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  46192451 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataagagctct 46192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 539 - 731
Target Start/End: Original strand, 52191200 - 52191392
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 638  Q
    |||||||||| || ||||||| ||||| |||||||  | ||||||| | ||| ||||||| |||||||||||||||  ||||| ||||||| |   | |     
T  52191200 ggaaaaagattgaaagacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatctcctctt 52191299  T
Q  639 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||  ||||||||||||||||||||| |||||||| | ||||||| ||| ||||||| |||||||||||||||||| |||||||||| |||||    
T  52191300 atcctttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataagggctct 52191392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 601 - 725
Target Start/End: Complemental strand, 51038893 - 51038768
Alignment:
Q  601 tattttagtaattttacatcatatcatcaccca-ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtat 699  Q
    |||||||||||||| |||||| | ||||||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||   |||||    
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  700 gccacctaaggtggttcatgtataag 725  Q
    ||||||||||||||| ||| ||||||    
T  51038793 gccacctaaggtggtccatatataag 51038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 599 - 725
Target Start/End: Complemental strand, 54849919 - 54849793
Alignment:
Q  599 ggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 698  Q
    ||||||||| |||||| |||||| ||||||| ||  | ||||||||||||||||| |||||||||| |||||||| || |||||||| | |||  |||||    
T  54849919 ggtattttaataatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgta 54849820  T
Q  699 tgccacctaaggtggttcatgtataag 725  Q
     || | |||||||||||||||||||||    
T  54849819 cgctatctaaggtggttcatgtataag 54849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 661 - 731
Target Start/End: Original strand, 25437007 - 25437077
Alignment:
Q  661 tcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||| |||||||| ||||| ||| ||| |||||||||||| ||||||||||||| |||||||||| |||||    
T  25437007 tcacatgtcacaattgtgtatggatgttaaaaggtgtatgtcacctaaggtggtccatgtataagggctct 25437077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 647 - 725
Target Start/End: Complemental strand, 36157918 - 36157840
Alignment:
Q  647 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 725  Q
    |||||||||||||||||||| |||||| | ||| || |||| |||  ||||||||||||||| || || ||| ||||||    
T  36157918 tttcaatgtttttgtcacgtatcacaattatgtatgagtgtcaaagagtgtatgccacctaaagtcgtccatatataag 36157840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 4e-74; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 538 - 730
Target Start/End: Original strand, 34307136 - 34307329
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| ||||||||||||||||||||||  || |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34307136 aggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 34307235  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  34307236 tcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataagagctc 34307329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 538 - 726
Target Start/End: Complemental strand, 2509217 - 2509028
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| ||||||| ||||||||||||||  || |||||| | |||||| |||||| |||||||||||||||||||||||||| ||||| |||    
T  2509217 aggaaaaagataggtagacactttttttcatacacctcttatgtacaccctcatgtattagggatattttagtaattttacatcatatcaccaccctttt 2509118  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 726  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  2509117 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataaga 2509028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 541 - 732
Target Start/End: Original strand, 39249864 - 39250056
Alignment:
Q  541 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattttca 639  Q
    |||||||||| ||||||||||||||||||||||  || |||||| | | |||| |||||||||||||||||||||||||| |||||| || || ||||||    
T  39249864 aaaaagataggtagacaccttttttcatacacctcttatgtacacccccatgtattaggggtattttagtaattttacattatatcaccatcctttttca 39249963  T
Q  640 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 732  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  39249964 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctcta 39250056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 538 - 730
Target Start/End: Original strand, 46901733 - 46901926
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||| | |||||||||||    || |||||| | | |||| | ||| |||||| |||||||||||||||||||||||||| |||    
T  46901733 aggaaaaagataggtagacatcctttttcatacatttcttatgtacaccgccatgtatcaggagtatttgagtaattttacatcatatcatcaccctttt 46901832  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||    
T  46901833 tcatctcttcttttaatgtttttgccacgtgtcacaaatatgtgttggtgtaaaatggtgtatgtcacctaaggtggttcatgtataagagctc 46901926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 538 - 730
Target Start/End: Complemental strand, 28647545 - 28647353
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||| |||||||| ||||| ||||| |  |  |||||||| |||||||||||  ||||||| |||||| |||||| |||| ||||| ||||    
T  28647545 aggaaaaagataggtagacacccttttttatacatctctcatgtacatcccatgtgttaggaatattttaataatttcacatcacatcaccacccctttt 28647446  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||| ||||||||||||||||| ||  | |||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||    
T  28647445 catctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaaagatgtatgcaaccttaggtggttcatgtataatagctc 28647353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 541 - 731
Target Start/End: Original strand, 19258674 - 19258864
Alignment:
Q  541 aaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcat 640  Q
    |||||||||| |||||||| ||||| ||||| |  |  |||||| | |||||||||||  ||||||| |||||| |||||| |||| ||||| |||||||    
T  19258674 aaaaagataggtagacacccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcat 19258773  T
Q  641 ctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    ||||| |||||||||||||| ||| |||||||||| | |||||||||||||||||||||||||||| || ||||| |||||||| ||||||    
T  19258774 ctcttttttcaatgtttttgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataatagctct 19258864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 539 - 712
Target Start/End: Original strand, 9642866 - 9643039
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt-t 637  Q
    |||||||||||| ||||||  |||||| ||||| |  || || |||  |||||||| |||| | |||||||||||| |||||||||||||||||  || |    
T  9642866 ggaaaaagataggtagacatttttttttatacatctattatgcacacttcatgtgt-agggatgttttagtaatttcacatcatatcatcacccccttct 9642964  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtg 712  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||||||||| ||||||| ||||||| ||||||||    
T  9642965 catctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaaaggtatatgccatctaaggtg 9643039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 607 - 726
Target Start/End: Complemental strand, 29099939 - 29099821
Alignment:
Q  607 agtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacct 706  Q
    |||||||| |||||| |||||||||| |||| || |||| |||||||||||||||||| ||||||||||||||||||  ||||| | |||||||||| ||    
T  29099939 agtaatttcacatcacatcatcaccccttttaatttcttttttcaatgtttttgtcacatgtcacaaatgtgtgtggacgtaaaga-gtgtatgccatct 29099841  T
Q  707 aaggtggttcatgtataaga 726  Q
    ||||||||| ||||||||||    
T  29099840 aaggtggtttatgtataaga 29099821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 110 - 230
Target Start/End: Original strand, 10418100 - 10418219
Alignment:
Q  110 aacatttggctagcaaagcaaagaagaaaagacataaaaattctcattttgctattggagaatatgtaatatgggtaaccaaataacacttctagtgcat 209  Q
    ||||||||| |||||||||| ||||| || | ||||||||||||||||||||||||  ||||||| |||||||||||||||||||| | ||  |||||||    
T  10418100 aacatttggatagcaaagcagagaagtaatgtcataaaaattctcattttgctatt-aagaatatttaatatgggtaaccaaataatagtttgagtgcat 10418198  T
Q  210 atgcagctttgagatatgata 230  Q
    || | ||||| | ||||||||    
T  10418199 atactgctttaatatatgata 10418219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 10412374 - 10412476
Alignment:
Q  110 aacatttggctagcaaagcaaagaagaaaagacataaaaattctcattttgctattggagaatatgtaatatgggtaaccaaataacacttctagtgcat 209  Q
    ||||||||||| | |||||| ||||| || | |||||||||||||||||| |||||  ||||||||||| |||||||||||||  | |||||||||||||    
T  10412374 aacatttggctggaaaagcagagaagtaacgtcataaaaattctcatttttctattt-agaatatgtaacatgggtaaccaaaagatacttctagtgcat 10412472  T
Q  210 atgc 213  Q
    ||||    
T  10412473 atgc 10412476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 647 - 725
Target Start/End: Complemental strand, 10147049 - 10146971
Alignment:
Q  647 tttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 725  Q
    ||||| |||||||| ||| |||||||| |||||||||| || ||| |||||||||||||||||||||| ||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataag 10146971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 10417994 - 10418070
Alignment:
Q  22 tggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagcaagagcaa 98  Q
    |||||||| ||||||||| |||||||||||||||||||| ||  |||||||||| | || |||||||||| ||||||    
T  10417994 tggtacaccatttgtaagcttttccttcaaagcaagcaaagcatgcttatcagtctctgtactcaaagcatgagcaa 10418070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 10412273 - 10412344
Alignment:
Q  24 gtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagcaagag 95  Q
    |||||| ||||||||| |||||||||||||||||||| ||  ||| |||| |   |||||||||||||||||    
T  10412273 gtacaccatttgtaagcttttccttcaaagcaagcaaagcatgctcatcaatcgctgaactcaaagcaagag 10412344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 3e-72; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 537 - 731
Target Start/End: Complemental strand, 16090014 - 16089821
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||| ||||||||||||||||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||| ||||  |||    
T  16090014 taggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcaccaccttttt 16089915  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  16089914 t-atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataagagctct 16089821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 538 - 730
Target Start/End: Complemental strand, 33732761 - 33732569
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||| |||||||| |||||||||||||  || |||||| | ||| | ||||||||||||||||||||||||||||||||| ||||| ||||    
T  33732761 aggaaaaagataggtagacaccctttttcatacacctcttatgtacaccccatatattaggggtattttagtaattttacatcatatcaccacccttttt 33732662  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33732661 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 33732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 537 - 727
Target Start/End: Complemental strand, 44958307 - 44958116
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 635  Q
    |||||||||||||| |||||| | |||||||||||||  || |||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44958307 taggaaaaagataggtagacatcctttttcatacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 44958208  T
Q  636 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 727  Q
    || |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44958207 tttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 44958116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 536 - 730
Target Start/End: Complemental strand, 36315756 - 36315561
Alignment:
Q  536 ataggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 634  Q
    ||||||||||||||| |||||| |||||||| |||||||  || |||||| ||||||||| |||||||||||| | |||| |||||| || ||||||  |    
T  36315756 ataggaaaaagataggtagacatccttttttgatacacctcttatgtacacctcatgtgtcaggggtattttaatcatttcacatcacattatcacctct 36315657  T
Q  635 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36315656 ttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 36315561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 542 - 731
Target Start/End: Original strand, 3830900 - 3831087
Alignment:
Q  542 aaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatc 641  Q
    ||||||||| |||||||| |||||||||||||  || |||||| | |||||||||||||||| ||||||||||||||||| || ||||||  ||||||||    
T  3830900 aaaagataggtagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtatattagtaattttacatcagataatcaccacttttcatc 3830999  T
Q  642 tcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||    
T  3831000 tcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagtgctct 3831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 535 - 739
Target Start/End: Original strand, 37498858 - 37499065
Alignment:
Q  535 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcaccca 633  Q
    |||||||||||||||| |||||||| ||||| |||||||  || |||||||| | ||||||||||||||||||||||||||||||||||||||||||||     
T  37498858 aataggaaaaagataggtagacacccttttttatacacctcttatgtacatccccatgtgttaggggtattttagtaattttacatcatatcatcaccct 37498957  T
Q  634 --ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
      ||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| | |||||||||  |||| ||||| || ||||||||||||    
T  37498958 ctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgccagttaagatggttgatatataagagctct 37499057  T
Q  732 aagaaata 739  Q
    || |||||    
T  37499058 aataaata 37499065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 588 - 731
Target Start/End: Complemental strand, 14573137 - 14572994
Alignment:
Q  588 catgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgt 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  14573137 catgtgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgt 14573038  T
Q  688 aaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||| |||| |||||||||||||||||| |||||||||||||||    
T  14573037 aaaagggtggatgccacctaaggtggtttatgtataagagctct 14572994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 537 - 730
Target Start/End: Original strand, 6376236 - 6376424
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||| |||||| | ||||| |||||||     ||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||    
T  6376236 taggaaaaagataggtagacatccttttttatacacctcccatgtacatctcatgtgttagaggtattttagtaatttcacatcacatcctcacccattt 6376335  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||     | ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||| |||||    
T  6376336 tcatctcttctttcaatg-----gccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataacagctc 6376424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 539 - 731
Target Start/End: Original strand, 37914236 - 37914428
Alignment:
Q  539 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||| |||||||| |||||||  || |||||| | |||||   | |||||||||| | |||| |||||| || ||||||| ||||    
T  37914236 ggaaaaagataggtagacacccttttttgatacacctcttatgtacaccccatgtacca-gggtattttaatcatttcacatcacattatcacccctttt 37914334  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
     |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||| ||||||    
T  37914335 tatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataaaagctct 37914428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 596 - 730
Target Start/End: Original strand, 24137149 - 24137287
Alignment:
Q  596 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg----ggtgtaaaa 691  Q
    ||||||||||||||||||| |||||| ||| ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||    ||||| |||    
T  24137149 aggggtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtaggtgtcaaa 24137248  T
Q  692 aggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
     ||||||| ||||||||||||||| |||||||| |||||    
T  24137249 gggtgtataccacctaaggtggtttatgtataacagctc 24137287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 539 - 722
Target Start/End: Complemental strand, 41188961 - 41188777
Alignment:
Q  539 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||  ||||||| |||| | |||||||  |  |||||||| ||||||| || | ||||||||||||||||||||| ||||||| || ||||    
T  41188961 ggaaaaagataggcagacacccttttgttatacacctctcatgtacatcacatgtgtcagagatattttagtaattttacatcacatcatcatccctttt 41188862  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtat 722  Q
    ||| || | |||||||||||||| ||| ||||| |||| ||| | | | ||||| |||||||| ||| ||| |||||||||||||    
T  41188861 catatcatttttcaatgtttttgccacatgtcataaatatgtatagatataaaagggtgtatgtcacataaagtggttcatgtat 41188777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 30633176 - 30633097
Alignment:
Q  25 tacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagcaagagcaattgttg 104  Q
    ||||| ||||||||| |||||||||||||||||||| |||||||||||||| | |||| |||||| ||| ||||||||||    
T  30633176 tacaccatttgtaagcttttccttcaaagcaagcaaagctagcttatcagtctttgaattcaaagaaagtgcaattgttg 30633097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 30660905 - 30660826
Alignment:
Q  25 tacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagcaagagcaattgttg 104  Q
    ||||| ||||||||| |||||||||||||||||||| |||||||||||||| | |||| |||||| ||| ||||||||||    
T  30660905 tacaccatttgtaagcttttccttcaaagcaagcaaagctagcttatcagtctttgaattcaaagaaagtgcaattgttg 30660826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 30669588 - 30669505
Alignment:
Q  22 tggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagcaagagcaattgttgc 105  Q
    |||||||| ||||||||| |||||||||||||||||||| || ||||||||||| | |||| |||||| ||| || ||||||||    
T  30669588 tggtacaccatttgtaagcttttccttcaaagcaagcaaagccagcttatcagtctttgaattcaaagaaagtgcgattgttgc 30669505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 1e-71; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 537 - 730
Target Start/End: Complemental strand, 30432532 - 30432339
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||| |||||||||| |||||||||||||  || |||||||| ||| | ||| ||||||||||||||||||||||||||||||||||| |||    
T  30432532 taggaaaaagattgatagacaccctttttcatacacctcttatgtacatcccatatattatgggtattttagtaattttacatcatatcatcaccccttt 30432433  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  30432432 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataagagctc 30432339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 539 - 730
Target Start/End: Complemental strand, 42162790 - 42162598
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||||  ||||||||||||  ||| |||||| | | |||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  42162790 ggaaaaagataggtagacactctttttcatacactttttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 42162691  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  42162690 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtataagagctc 42162598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 537 - 730
Target Start/End: Complemental strand, 36189408 - 36189216
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||| |||||||| |||||||||||||| || |||||| | ||| |||||||||||||||| |||||||| ||||||||||||| | |||    
T  36189408 taggaaaaagataggtagacaccctttttcatacaccacttatgtacacc-catatgttaggggtattttaataattttatatcatatcatcactccttt 36189310  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  36189309 tcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagctc 36189216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 538 - 727
Target Start/End: Complemental strand, 18184745 - 18184556
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||| |||||| | ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  18184745 aggaaaaagataggtagacatcctttttcatacaccttttatgtacacctcatgtgttaggggtattttagtaattttatatcatatcatcacccctttt 18184646  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 727  Q
    ||||||||| |||||||||||   |||||||||||||| ||||||| ||||||| |||||||| ||| ||||||||||||| ||||||||    
T  18184645 catctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacttaaggtggttcatatataagag 18184556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 537 - 733
Target Start/End: Complemental strand, 31318999 - 31318802
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatt 635  Q
    |||||||||||||| |||||| | ||||||||||||   || | |||| | | |||| ||||| |||||| |||||||||||||||||||||||||| ||    
T  31318999 taggaaaaagataggtagacatcatttttcatacacttcttatatacacccccatgtattaggagtatttgagtaattttacatcatatcatcacccttt 31318900  T
Q  636 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 733  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||    
T  31318899 ttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtataagagctctaa 31318802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 539 - 731
Target Start/End: Complemental strand, 10203856 - 10203663
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||||| ||||||||||| |  || |||||| | |||||| |||||| |||||||||||||||| ||||||||| ||||| ||||    
T  10203856 ggaaaaagataggtagacaccctttttcatacatctcttatgtacaccctcatgtattagggatattttagtaattttatatcatatcaccacccttttt 10203757  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||| ||||    
T  10203756 catctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataagaactct 10203663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 537 - 727
Target Start/End: Complemental strand, 12665539 - 12665347
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 635  Q
    |||||||||||||| |||||| | |||||| ||||||  || |||| | | |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  12665539 taggaaaaagataggtagacatcctttttcgtacacctcttatgtataccctcatgtgttaggggtattttagtaattttacatcatatcatcacccttt 12665440  T
Q  636 ttc-atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 727  Q
    ||  |||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  12665439 ttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataagag 12665347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 547 - 729
Target Start/End: Complemental strand, 44081964 - 44081781
Alignment:
Q  547 atagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctctt 645  Q
    |||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  44081964 ataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacattatatcatcaccctttttcatctctt 44081865  T
Q  646 ctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagct 729  Q
    ||||||||||||||  ||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  44081864 ctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataagagct 44081781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 539 - 724
Target Start/End: Complemental strand, 33726203 - 33726017
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca-tttt 637  Q
    |||||||||||| |||||||| ||||| |||||||     ||||||  |||||||||||||||||||||||||||| |||||| ||| ||| ||| ||||    
T  33726203 ggaaaaagataggtagacacccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccactttt 33726104  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 724  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  33726103 catctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 537 - 732
Target Start/End: Complemental strand, 43186220 - 43186025
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||| |||||| | ||||||||||||   || |||||| |  |||| ||||||| |||| |||||||||| ||||||||||||||  |||    
T  43186220 taggaaaaagataggtagacatcatttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaattttatatcatatcatcaccttttt 43186121  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 732  Q
    |||||| ||||||||||||||||| ||| | |||||||||||||  |||||||||  || |||||||||||| |||||| |||||||||| |||||    
T  43186120 tcatcttttctttcaatgtttttgccacatatcacaaatgtgtgcaggtgtaaaagagtatatgccacctaaagtggttgatgtataagaactcta 43186025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 579 - 710
Target Start/End: Original strand, 42668821 - 42668952
Alignment:
Q  579 tgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgt 677  Q
    |||||||||| ||||  |||||||||| ||||||||| |||||||| |||||||  | | ||| |||||||| |||||||||| |||||||||||| |||    
T  42668821 tgtacatctccatgttgtaggggtattgtagtaatttcacatcataccatcacctctct-catatcttcttttaatgtttttgccacgtgtcacaattgt 42668919  T
Q  678 gtgtgggtgtaaaaaggtgtatgccacctaagg 710  Q
    |||||||||| |||  |||||||||||||||||    
T  42668920 gtgtgggtgtcaaagtgtgtatgccacctaagg 42668952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 540 - 682
Target Start/End: Original strand, 38845023 - 38845165
Alignment:
Q  540 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 638  Q
    |||||||||||||| ||||| ||||| ||||||| ||  |||||| | | ||||||||||| ||||||||||||||  ||||| |||||||||| | ||     
T  38845023 gaaaaagatagataaacaccattttttatacacccttcatgtacacccttatgtgttagggttattttagtaatttctcatcacatcatcacccctctt- 38845121  T
Q  639 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtg 682  Q
    |||| |||||||||| |||||  ||| |||||||| ||||||||    
T  38845122 atcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 639 - 725
Target Start/End: Original strand, 31547 - 31633
Alignment:
Q  639 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 725  Q
    |||||||||||||||||||||| ||| |||||||| ||| ||||||||| |||  |||||||| ||||||| |||| ||| ||||||    
T  31547 atctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataag 31633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 539 - 725
Target Start/End: Original strand, 3690602 - 3690788
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 638  Q
    ||||||||||||||||||| | ||||| ||||||| ||  | || ||   |||||| || |||||||| |||||||  || || |||||||||   | ||    
T  3690602 ggaaaaagatagatagacatccttttttatacacctttcatatatattctatgtgtcagaggtatttttgtaatttcgcaacacatcatcacctcatctc 3690701  T
Q  639 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataag 725  Q
    ||||||||||| ||| |||| |  || |||||||| ||||||||| | | ||| | |||||| |||||||| || ||||||||||||    
T  3690702 atctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataag 3690788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 589 - 708
Target Start/End: Original strand, 35849502 - 35849623
Alignment:
Q  589 atgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttca--atgtttttgtcacgtgtcacaaatgtgtgtgggtg 686  Q
    |||||| |||||  ||||| |||||| | |||| |||||| ||| || ||||||||||||| |  || |||||| || ||||||||| |||||||  |||    
T  35849502 atgtgtcaggggggttttaataatttcatatcacatcatcgccccttctcatctcttcttttaatatttttttgccatgtgtcacaattgtgtgtaagtg 35849601  T
Q  687 taaaaaggtgtatgccacctaa 708  Q
    | ||| | ||||||||||||||    
T  35849602 ttaaatgatgtatgccacctaa 35849623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 13563241 - 13563200
Alignment:
Q  31 atttgtaagtttttccttcaaagcaagcaaggctagcttatc 72  Q
    ||||||||| ||||||| |||||||||||| |||||||||||    
T  13563241 atttgtaagcttttcctacaaagcaagcaaagctagcttatc 13563200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 1e-71; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 538 - 730
Target Start/End: Original strand, 45782658 - 45782851
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||||| ||||| ||||||  ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45782658 aggaaaaagataggtagacacccttttttatacactttttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 45782757  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  45782758 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtataagagctc 45782851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 539 - 731
Target Start/End: Original strand, 36346564 - 36346756
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||||| |||||||||||||  || |||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  36346564 ggaaaaagataggtagacaccctttttcatacacctcttatgtacaccctcatgtgttaggggtattttagtaattttacatcatatcatcacct-tttt 36346662  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  36346663 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 36346756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 538 - 730
Target Start/End: Original strand, 42220962 - 42221154
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| ||||||||||||| ||||||||| || ||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| |||    
T  42220962 aggaaaaagataggtagacaccttttt-catacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccccttt 42221060  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    | || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42221061 ttatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataagagctc 42221154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 538 - 733
Target Start/End: Original strand, 26972201 - 26972397
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  26972201 aggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 26972300  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 733  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26972301 tcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctctaa 26972397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 538 - 730
Target Start/End: Original strand, 28307493 - 28307686
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||| |||||||||||||||  || |||||| | | || ||||| ||||||||||||||||||||||||||||||||||| |||    
T  28307493 aggaaaaagataggtagacatcttttttcatacacctcttatgtacacccccatatgttaagggtattttagtaattttacatcatatcatcaccctttt 28307592  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||    
T  28307593 tcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtataagagctc 28307686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 537 - 724
Target Start/End: Complemental strand, 31148483 - 31148296
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||| |||||||  |||||||||||||  || |  ||| | ||| |||||||  ||||||||||||||||||||||||||||||||||||    
T  31148483 taggaaaaagataggtagacactctttttcatacacctcttatacacaccccatatgttaggcttattttagtaattttacatcatatcatcacccattt 31148384  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 724  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  31148383 tcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 539 - 732
Target Start/End: Original strand, 7700476 - 7700670
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700476 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700575  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 732  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  7700576 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctcta 7700670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 538 - 730
Target Start/End: Complemental strand, 34108619 - 34108426
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| || ||||| ||||||||||||   || |||||| || ||||| |||||||||||| |||||||||||||||||||||||||| |||    
T  34108619 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacactcccatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34108520  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    |||||||||| ||||||||||||||||  |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  34108519 tcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataagagctc 34108426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 539 - 730
Target Start/End: Original strand, 7699882 - 7700074
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7699882 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7699981  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7699982 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 539 - 730
Target Start/End: Original strand, 7700080 - 7700272
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700080 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700179  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700180 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 539 - 730
Target Start/End: Original strand, 7700278 - 7700470
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatct-catgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| || ||||| |||||||||||||  || | |||| || ||||||||| ||||||||||||||||||| |||||||||||| || ||||    
T  7700278 ggaaaaagataggtaaacaccctttttcatacacctcttatatacaccttcatgtgttatgggtattttagtaattttatatcatatcatcatccttttt 7700377  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
     |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7700378 tatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtataagagctc 7700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 535 - 727
Target Start/End: Complemental strand, 34828260 - 34828069
Alignment:
Q  535 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 634  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | ||| |||||||||||||||||||||||||||||||||||||| |  |    
T  34828260 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatatgttaggggtattttagtaattttacatcatatcatcatcact 34828161  T
Q  635 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 727  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||| |||| |||||||||||||||||||||    
T  34828160 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatg-cacccaaggtggttcatgtataagag 34828069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 538 - 730
Target Start/End: Complemental strand, 13108339 - 13108148
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||| |||||||| ||||| ||||||| ||  |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| |||     
T  13108339 aggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt- 13108241  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||    
T  13108240 catctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataacagctc 13108148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 537 - 730
Target Start/End: Original strand, 5811161 - 5811354
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| |||    
T  5811161 taggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt 5811260  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| | ||||||||||||| ||||||| |||||||| |||||    
T  5811261 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataatagctc 5811354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 537 - 724
Target Start/End: Complemental strand, 23980324 - 23980137
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||| |||||| | ||||| |||||   |   |||||||||||| |||||| |||||||||||||||| |||||| ||| |||||| |||    
T  23980324 taggaaaaagataggtagacatccttttttatacattttccatgtacatctcatatgttagaggtattttagtaatttcacatcacatcctcaccccttt 23980225  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataa 724  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||    
T  23980224 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 553 - 730
Target Start/End: Complemental strand, 30887877 - 30887700
Alignment:
Q  553 agacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaa 652  Q
    ||||||| ||||||||||||   || | |||| | ||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||||| |||||    
T  30887877 agacaccctttttcatacacttcttatatacaccccatgtattagaggtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaa 30887778  T
Q  653 tgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||  ||||||||||||||| |||||||||||||  |||||||||||||||| | ||||||||||||||||||    
T  30887777 tgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtataagagctc 30887700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 591 - 726
Target Start/End: Original strand, 21807374 - 21807509
Alignment:
Q  591 gtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaa 690  Q
    |||||||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||||| |||||| ||| | |||||||| ||||||||||||||    
T  21807374 gtgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaa 21807473  T
Q  691 aaggtgtatgccacctaaggtggttcatgtataaga 726  Q
    | ||||||||||| ||||||||||||||||||||||    
T  21807474 atggtgtatgccatctaaggtggttcatgtataaga 21807509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 530 - 688
Target Start/End: Complemental strand, 46475225 - 46475066
Alignment:
Q  530 taagaaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgtta-ggggtattttagtaattttacatcatatcatc 628  Q
    ||||| ||||||||||||||| |||||||| ||||| |||||||  |  |||||||||||||||||| |||||||||||||||||| |||||| ||| ||    
T  46475225 taagatataggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtc 46475126  T
Q  629 acccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 688  Q
    |||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||    
T  46475125 accccttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgtatgggtgta 46475066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 538 - 709
Target Start/End: Complemental strand, 36957620 - 36957450
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||| |||||||  ||||| ||||||| ||  | |||| | |||||||| ||||||||||||||||||||||| | || |||| |||||||    
T  36957620 aggaaaaagataggtagacacaattttttatacacctttcatatacacc-catgtgttgggggtattttagtaattttacattacattatcatccatttt 36957522  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaag 709  Q
    ||||||||||| |||| ||||||||||||||||||||| ||| ||| ||||||| |||||||||||||||||    
T  36957521 catctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtatgccacctaag 36957450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 581 - 730
Target Start/End: Complemental strand, 15020428 - 15020282
Alignment:
Q  581 tacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtg 680  Q
    ||||||||||||||||||| |||||||||||||| |||||||||| ||||||  |||| ||||||||||||||||||||| ||  |||||||||  ||||    
T  15020428 tacatctcatgtgttagggatattttagtaatttcacatcatatcttcaccc-ctttcgtctcttctttcaatgtttttgccatatgtcacaaa--tgtg 15020332  T
Q  681 tgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||| | ||||||||||||| ||||||| |||||||| |||||    
T  15020331 tgggtgtaaaaggttgtatgccacctatggtggtttatgtataacagctc 15020282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 29625430 - 29625643
Alignment:
Q  35 gtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagcaagagcaattgttgctaat---------------aacatttggc 119  Q
    ||||| |||||||||||||||||||| || ||||||||||||| ||||||| ||| || ||||| ||||||||||               |||||||| |    
T  29625430 gtaagcttttccttcaaagcaagcaaagcgagcttatcagtgtctgaactcgaagaaatagcaaatgttgctaatggccagtcatacaccaacatttgac 29625529  T
Q  120 tagcaaagcaaagaagaaaagacataaaaattctcattttgctattggagaatatgtaatatgggtaaccaaataaca----cttctagtgcatatgcag 215  Q
    | |||||||| ||||||||     |||||||||||||||||||| ||||||||||||| |||||||||| |||||| |    |||||| |||||||||||    
T  29625530 ttgcaaagcagagaagaaacattgtaaaaattctcattttgctagtggagaatatgtattatgggtaacaaaataataatatcttctaatgcatatgcag 29625629  T
Q  216 ctttgagatatgat 229  Q
    ||||||||| ||||    
T  29625630 ctttgagatttgat 29625643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 596 - 725
Target Start/End: Complemental strand, 38321143 - 38321014
Alignment:
Q  596 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 695  Q
    |||| |||||||||| ||| |||||| | |||||||   | |||| ||||||||||||||||||| ||| |||||||| ||| ||||||||| |||| ||    
T  38321143 agggatattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgt 38321044  T
Q  696 gtatgccacctaaggtggttcatgtataag 725  Q
    |||||||||||||| ||||| |||||||||    
T  38321043 gtatgccacctaagatggttaatgtataag 38321014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 601 - 691
Target Start/End: Original strand, 20086690 - 20086780
Alignment:
Q  601 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 691  Q
    |||||||||||||| |||||| |||||||||| |||| ||||||||||| |||||||||| ||  |||| ||||||| |||||||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgtaaaa 20086780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 538 - 632
Target Start/End: Original strand, 29953570 - 29953665
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcaccc 632  Q
    ||||||||||||| |||||||| ||||||||||||   || |||| |  || |||| |||||| ||||| ||||||||||||||||||||||||||    
T  29953570 aggaaaaagataggtagacaccctttttcatacacttcttatgtagacttccatgtattagggatatttgagtaattttacatcatatcatcaccc 29953665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 635 - 688
Target Start/End: Original strand, 42950109 - 42950162
Alignment:
Q  635 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgta 688  Q
    ||||||||||| ||||||||| |||| ||| | |||||||||||||||||||||    
T  42950109 tttcatctcttttttcaatgtatttgccacatatcacaaatgtgtgtgggtgta 42950162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 614
Target Start/End: Original strand, 42950034 - 42950111
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattt 614  Q
    |||||||||||||| |||||||| ||||| |||||||     |||||| | ||||| | |||||||||||||||||||    
T  42950034 taggaaaaagataggtagacacccttttttatacacctagcatgtacaccccatgtttcaggggtattttagtaattt 42950111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 7e-70; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 535 - 732
Target Start/End: Complemental strand, 44000185 - 43999987
Alignment:
Q  535 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcaccca 633  Q
    |||||||||||||||| |||||||  ||||||||||||  ||| |||||  | |||||| |||| ||||||| ||||||||||||||||||||||||||     
T  44000185 aataggaaaaagataggtagacactctttttcatacactttttatgtacgccctcatgtattagaggtatttgagtaattttacatcatatcatcaccct 44000086  T
Q  634 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 732  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44000085 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctcta 43999987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 539 - 731
Target Start/End: Complemental strand, 21559753 - 21559560
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||||||||||| |||||||||||||  || |||||| | | ||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  21559753 ggaaaaagatagatagacaccatttttcatacacctcttatgtacacccccatgtgttaggggtattttagtaattttacatcatatcattacccttttt 21559654  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  21559653 catctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataagagctct 21559560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 537 - 731
Target Start/End: Original strand, 51339781 - 51339973
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||| |||||||| |||||||||||||  || ||||||  ||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  51339781 taggaaaaagataggtagacaccctttttcatacacctcttatgtacacatcatgtgttagaggtattttagtaattttacatcatatcatcaccctttt 51339880  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||||||||||||||||||||||| |||||||||||||  ||||||||||||||| | ||||||||||||||||||||| |||||||||||||||    
T  51339881 tcatctcttctttcaatgtttttgccacgtgtcacaaa--tgtgtgggtgtaaaaggatgtatgccacctaaggtggtttatgtataagagctct 51339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 539 - 731
Target Start/End: Original strand, 36370337 - 36370530
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||| ||  ||||||||||||  ||| | |||| | |||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  36370337 ggaaaaagataggtagatactctttttcatacactttttatatacaccctcatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 36370436  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36370437 catctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtataagagctct 36370530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 541 - 731
Target Start/End: Complemental strand, 36749596 - 36749405
Alignment:
Q  541 aaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 639  Q
    |||||||||| |||||||  ||||||||||||  ||| |||||| | |||||| |||| ||||||| |||||||||||||||||||||||||| ||||||    
T  36749596 aaaaagataggtagacactctttttcatacactttttatgtacaccctcatgtattagaggtatttgagtaattttacatcatatcatcaccctttttca 36749497  T
Q  640 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  36749496 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtataagagctct 36749405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 539 - 731
Target Start/End: Original strand, 46111943 - 46112136
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||||| ||||||||||||| ||| | |||||| | |||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  46111943 ggaaaaagataggtagacaccatttttcatacaccttttatatacatccccatgtattaggggtattttagtaattttacatcatatcatcacccttttt 46112042  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||| |||||||| |||||||||||||||| ||||    
T  46112043 catctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtataagaactct 46112136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 540 - 730
Target Start/End: Complemental strand, 22894870 - 22894680
Alignment:
Q  540 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 638  Q
    |||||||||||||||||||| |||| |||||||   || |||||| | |||||| |||||||||||| ||||||| ||||||||||||||| || |||||    
T  22894870 gaaaaagatagatagacaccctttt-catacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcatcctttttc 22894772  T
Q  639 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22894771 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 22894680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 538 - 730
Target Start/End: Original strand, 34749896 - 34750089
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||  ||||| | ||||||||||||   || |||||| | | |||| |||||||||||| |||||||||||||||||||||||||| |||    
T  34749896 aggaaaaagatagccagacatcctttttcatacacttcttatgtacacccctatgtattaggggtatttgagtaattttacatcatatcatcaccctttt 34749995  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34749996 tcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 34750089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 538 - 731
Target Start/End: Original strand, 30735494 - 30735687
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtatttt-agtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||||| |||||||||||||| || ||||||   ||||||||||||||||||| |||||||| ||||||||||||||||| |||    
T  30735494 aggaaaaagataggtagacaccctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcaccctttt 30735593  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    | || ||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||    
T  30735594 t-atatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataagagctct 30735687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 539 - 730
Target Start/End: Complemental strand, 38231484 - 38231293
Alignment:
Q  539 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||| |||||||| |||||||  || |||||| | ||||||| ||||||| |||||| |||| |||| | || || ||| |||||    
T  38231484 ggaaaaagataggtagacatccttttttgatacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattattacc-atttt 38231386  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||| ||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38231385 catatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 38231293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 538 - 727
Target Start/End: Complemental strand, 48200878 - 48200688
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||| | ||||||||||||  ||| |||||| | | |||| ||| |||||||| ||||||||||||||||||||||| || |||    
T  48200878 aggaaaaagataggtagacatcctttttcatacactttttatgtacacccccatgtattatgggtatttgagtaattttacatcatatcatcatcctttt 48200779  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagag 727  Q
    ||||||||||||||||| |||||| |||||||||||||| | ||||| ||||||||||||||||||||||||| || |||||| |||||||    
T  48200778 tcatctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtatgccacctaagatgattcatgaataagag 48200688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 534 - 733
Target Start/End: Original strand, 39467096 - 39467295
Alignment:
Q  534 aaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca 633  Q
    ||||||||||||||||| || ||||| ||||| |||||||     |||||| ||||||||||| || |||||||||||||| | |||| ||| ||||||     
T  39467096 aaataggaaaaagataggtacacacccttttttatacacctcccatgtacacctcatgtgttatggatattttagtaatttcatatcacatcctcacccc 39467195  T
Q  634 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctctaa 733  Q
    |||||||||||||||||||| |||||| ||| |||||||||| ||||||||||||||| |||||||| || ||| ||||||| ||| |||| ||||||||    
T  39467196 ttttcatctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataacagctctaa 39467295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 632 - 730
Target Start/End: Complemental strand, 29460758 - 29460660
Alignment:
Q  632 cattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29460758 cattttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29460660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 632 - 730
Target Start/End: Complemental strand, 29471610 - 29471512
Alignment:
Q  632 cattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29471610 cattttcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctc 29471512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 539 - 732
Target Start/End: Original strand, 39072278 - 39072466
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 638  Q
    |||||||||||| |||||||  ||||| ||||| | ||  |||||| | ||||||| | ||||||||||||||     ||||| ||||||||||||||||    
T  39072278 ggaaaaagataggtagacacacttttttatacatctttgatgtacaccccatgtgtcaagggtattttagtaa-----catcacatcatcacccattttc 39072372  T
Q  639 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 732  Q
    ||||||||||| ||||||| || ||| |||||||||||| ||||||||||||| |||||||| || |||||||| ||||||||||| |||||||    
T  39072373 atctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataatagctcta 39072466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 601 - 731
Target Start/End: Complemental strand, 50966256 - 50966130
Alignment:
Q  601 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 700  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||||    
T  50966256 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 50966160  T
Q  701 ccacctaaggtggttcatgtataagagctct 731  Q
    ||||||||| | |||||||||||||||||||    
T  50966159 ccacctaagat-gttcatgtataagagctct 50966130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 601 - 731
Target Start/End: Complemental strand, 51069391 - 51069265
Alignment:
Q  601 tattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatg 700  Q
    ||||||||||||||||||| ||||||||   | |||||||||||||||||||| ||||||||||||||||||||||||  | | ||||||| ||||||||    
T  51069391 tattttagtaattttacattatatcatc---ctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtgaatagatgtaaaagggtgtatg 51069295  T
Q  701 ccacctaaggtggttcatgtataagagctct 731  Q
    ||||||||| | |||||||||||||||||||    
T  51069294 ccacctaagat-gttcatgtataagagctct 51069265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 539 - 722
Target Start/End: Original strand, 20856153 - 20856334
Alignment:
Q  539 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||| | ||| |||||| | |||||||  |  |||||| | ||||||| |||||||||| |||||||||| |||| ||||||| || ||||    
T  20856153 ggaaaaagatagacaaacatctttttgttatacacctctcatgtacaccccatgtgtcaggggtattt-agtaattttatatcacatcatcatccttttt 20856251  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtat 722  Q
     || |||| |||||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||    
T  20856252 -atatctt-tttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 535 - 638
Target Start/End: Complemental strand, 29473004 - 29472901
Alignment:
Q  535 aataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccat 634  Q
    |||||||||||||||| |||||| | |||||||||||||| || || ||| | |||||||||||||||||||||||||||||||||||||||||| || |    
T  29473004 aataggaaaaagataggtagacatcctttttcatacaccacttatgcacaccccatgtgttaggggtattttagtaattttacatcatatcatcatccct 29472905  T
Q  635 tttc 638  Q
    ||||    
T  29472904 tttc 29472901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 596 - 708
Target Start/End: Complemental strand, 53638269 - 53638157
Alignment:
Q  596 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 695  Q
    ||||||||||||| |||||||||||| ||||||||||  | |||||||||||||| ||||||||  ||| |||||| | ||||||||||||| ||| |||    
T  53638269 aggggtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggt 53638170  T
Q  696 gtatgccacctaa 708  Q
    |||||||||||||    
T  53638169 gtatgccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 637 - 723
Target Start/End: Original strand, 29820397 - 29820483
Alignment:
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtata 723  Q
    ||||||||||||| ||||||||||  || | |||||| ||| ||||||||| |||  |||||||||||||||||||||  |||||||    
T  29820397 tcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 1153091 - 1153036
Alignment:
Q  31 atttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactca 86  Q
    |||||||||||||| ||||||||||||||| |||||||| || |||| ||||||||    
T  1153091 atttgtaagttttttcttcaaagcaagcaaagctagcttgtccgtgtctgaactca 1153036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 129; Significance: 3e-66; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 539 - 726
Target Start/End: Complemental strand, 6910 - 6722
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||| ||||||||||||||||   || |||||| | |||||| |||||| ||||| |||||||||||||||||||||||||| ||||    
T  6910 ggaaaaagataggtagataccttttttcatacacttcttatgtacaccctcatgtattagggatatttaagtaattttacatcatatcatcacccttttt 6811  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 726  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6810 catctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaga 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 3e-66; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 539 - 730
Target Start/End: Complemental strand, 39371119 - 39370927
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||||| ||||||||||||   || ||||||  | ||||| |||||||||||| |||||||||||||||||||||||||| ||||    
T  39371119 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccatgtattaggggtatttgagtaattttacatcatatcatcacccttttt 39371020  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39371019 catctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataagagctc 39370927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 539 - 732
Target Start/End: Complemental strand, 13347320 - 13347126
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatc-tcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||||| ||||||||||||   || |||||| | |||||| |||||||||||| ||||||| |||||||||||||||| | ||||    
T  13347320 ggaaaaagataggtagacaccctttttcatacacttcttatgtacaccctcatgtattaggggtatttgagtaattatacatcatatcatcactcttttt 13347221  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctcta 732  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  13347220 catctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataaaagctcta 13347126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 538 - 731
Target Start/End: Original strand, 40887940 - 40888134
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||||| |||||||||||||  || |||||| | | || | |||| |||||||||||||||||||||||||||| ||||| |||    
T  40887940 aggaaaaagataggtagacaccctttttcatacacctcttatgtacacccccatctattagaggtattttagtaattttacatcatatcaccaccctttt 40888039  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||    
T  40888040 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataagagctct 40888134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 539 - 731
Target Start/End: Original strand, 1815619 - 1815808
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttc 638  Q
    |||||||||||| |||||||||||||||||| |  | |   ||||| |  |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1815619 ggaaaaagataggtagacaccttttttcataaagaaat---gtacaccctatgtgttaggggtattttagtaattttacatcatatcatcaccccttttc 1815715  T
Q  639 atctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||| |||||||| |||||||||||||||||||||    
T  1815716 atctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataagagctct 1815808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 539 - 730
Target Start/End: Complemental strand, 2237468 - 2237276
Alignment:
Q  539 ggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||||| ||||||||||||   || |||||| | | | || |||||||||||| |||||||||||||||||||||||||| ||||    
T  2237468 ggaaaaagataggtagacaccctttttcatacacttcttatgtacacccccaagtattaggggtatttgagtaattttacatcatatcatcacccttttt 2237369  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  2237368 catctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtataaaagctc 2237276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 537 - 731
Target Start/End: Original strand, 27553372 - 27553565
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||| ||||||||||||| |||||||||||||  || |||||| |  |||||||||| |||||||||||||||||||||| || ||||||  |||    
T  27553372 taggaaaaa-atagatagacaccctttttcatacacctcttatgtacaccctatgtgttaggagtattttagtaattttacatcagataatcaccatttt 27553470  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||    
T  27553471 tcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataagagctct 27553565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 594 - 732
Target Start/End: Original strand, 9408094 - 9408232
Alignment:
Q  594 ttaggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaag 693  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |    
T  9408094 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagg 9408193  T
Q  694 gtgtatgccacctaaggtggttcatgtataagagctcta 732  Q
    | ||||| ||||| |||||||||||||||||||||||||    
T  9408194 gcgtatgtcacctgaggtggttcatgtataagagctcta 9408232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 538 - 719
Target Start/End: Complemental strand, 14831737 - 14831555
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| || ||||| ||||||||||||   || |||||| | | | || |||||||||||| | |||||||||||||||||||||||| |||    
T  14831737 aggaaaaagataggtaaacaccctttttcatacacttcttatgtacacccctacgtattaggggtatttgaataattttacatcatatcatcaccctttt 14831638  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatg 719  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14831637 tcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 538 - 691
Target Start/End: Complemental strand, 31800750 - 31800597
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||||  ||||||| |||||||||||||  ||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  31800750 aggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 691  Q
    ||||| |||||||||| |||||| ||||||||| ||||||||||||||||||||    
T  31800650 catcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgtaaaa 31800597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 596 - 733
Target Start/End: Complemental strand, 17225451 - 17225316
Alignment:
Q  596 aggggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggt 695  Q
    ||||||||||||||||||| |||||| |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |     
T  17225451 aggggtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaa--ga 17225354  T
Q  696 gtatgccacctaaggtggttcatgtataagagctctaa 733  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17225353 gtatgccacctaaagtggttcatgtataagagctctaa 17225316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 539 - 730
Target Start/End: Original strand, 19596067 - 19596258
Alignment:
Q  539 ggaaaaagatagatagaca-ccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    |||||||||||| |||||| |||||||| | | |||  || |||||| | ||||||| ||||||| |||||| |||| |||| | || |||||  |||||    
T  19596067 ggaaaaagataggtagacatccttttttgaaatacctcttatgtacaccccatgtgtcaggggtagtttagtcatttcacattacattatcact-atttt 19596165  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    || |||||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  19596166 cacctcttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataacagctc 19596258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 634 - 730
Target Start/End: Original strand, 33404531 - 33404627
Alignment:
Q  634 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||    
T  33404531 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataagagctc 33404627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 540 - 731
Target Start/End: Original strand, 4300544 - 4300735
Alignment:
Q  540 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 639  Q
    ||||||||| |||||||| | ||||| ||||| |  |  |||||| |||||||||||||| ||||||| |||||| |||||| |||| ||||  |||| |    
T  4300544 gaaaaagattgatagacatccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccatttttta 4300643  T
Q  640 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    |||||| |||||||||||||| ||  |||||||||| ||||||||||||||| | | |||| |||||||  |||||||||||||||||||||    
T  4300644 tctcttatttcaatgtttttgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataagagctct 4300735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 538 - 659
Target Start/End: Complemental strand, 42683792 - 42683670
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctc-atgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    |||||||||||||||||||| | |||||||||||||  || |||||| | | || | ||||||||||||||||||||||||||||||||| || || |||    
T  42683792 aggaaaaagatagatagacatcctttttcatacacctcttatgtacacccccatatattaggggtattttagtaattttacatcatatcaccatcctttt 42683693  T
Q  637 tcatctcttctttcaatgttttt 659  Q
    |||||||||||||||||||||||    
T  42683692 tcatctcttctttcaatgttttt 42683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 539 - 721
Target Start/End: Original strand, 41003850 - 41004031
Alignment:
Q  539 ggaaaaagatagatagacaccttttt-tcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||| ||| |||||||| | |||||||  |  |||||| | ||| ||| |||| || |||||||||||||||||| ||||||| || ||||    
T  41003850 ggaaaaagatagacagaaacctttttgttatacacctctcatgtacaccccatatgtcagggata-tttagtaattttacatcacatcatcatccctttt 41003948  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgta 721  Q
     || |||| ||||||| |||||| ||| ||||| |||||||| || |||||||| |||||||||||||||| ||||||||||||    
T  41003949 tatatctt-tttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgccacctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 599 - 733
Target Start/End: Original strand, 19124532 - 19124664
Alignment:
Q  599 ggtattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgta 698  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||| |||||||||| |||  ||||||| |||||||||||||  ||| |||||    
T  19124532 ggtattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgt-caaatgtgta 19124629  T
Q  699 tgccacctaaggtggttcatgtataagagctctaa 733  Q
    ||||| ||||| | || ||||||||||| ||||||    
T  19124630 tgccatctaagatagtccatgtataagaactctaa 19124664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 35752703 - 35752630
Alignment:
Q  22 tggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagcaagag 95  Q
    |||||||| ||||||||| |||||||| ||||||||||| || ||||||||||| || |||||||||| |||||    
T  35752703 tggtacaccatttgtaagcttttcctttaaagcaagcaaagcaagcttatcagtctgcgaactcaaagaaagag 35752630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 596 - 727
Target Start/End: Complemental strand, 12164388 - 12164254
Alignment:
Q  596 aggggtattttagtaattttacatcatatcatcacccattttcatctct---tctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaa 692  Q
    ||||| ||||||||||||| |||||| | ||||||||  |  |||||||   |||||||||||||||| ||| || ||||| |||||||| || | |||     
T  12164388 aggggcattttagtaatttcacatcacaccatcaccctctcccatctcttcttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaag 12164289  T
Q  693 ggtgtatgccacctaaggtggttcatgtataagag 727  Q
      ||| ||||||||||| |||||||||||||||||    
T  12164288 aatgtgtgccacctaagatggttcatgtataagag 12164254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 35364742 - 35364670
Alignment:
Q  26 acactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaagcaagagcaa 98  Q
    |||| ||||||||| ||||| |||||||||||||| || || |||||||| |||||||||||||||| |||||    
T  35364742 acaccatttgtaagcttttctttcaaagcaagcaaagcaagtttatcagtctgtgaactcaaagcaaaagcaa 35364670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 35404467 - 35404400
Alignment:
Q  22 tggtacactatttgtaagtttttccttcaaagcaagcaaggctagcttatcagtgtgtgaactcaaag 89  Q
    |||||||| ||||||||| ||||||||||| |||||||| || ||||||||||| | |||||||||||    
T  35404467 tggtacaccatttgtaagcttttccttcaatgcaagcaaagccagcttatcagtctttgaactcaaag 35404400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 35404364 - 35404239
Alignment:
Q  110 aacatttggctagcaaagcaaagaagaaa-agacataaaaattctcattttgctattggagaatatg---taatatgggtaaccaaataaca-cttctag 204  Q
    |||||||||||||||||||| |||||||  | | | ||||| | |||||||||||||||||||||||   || |||||||||| ||| || | |||||||    
T  35404364 aacatttggctagcaaagcagagaagaatcataaaaaaaaaat-tcattttgctattggagaatatgtattattatgggtaactaaagaataccttctag 35404266  T
Q  205 tgc--atatgcagctttgagatatgat 229  Q
    |||  ||||||||||||||||| ||||    
T  35404265 tgcatatatgcagctttgagatttgat 35404239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 35364634 - 35364567
Alignment:
Q  113 atttggctagcaaagcaaagaagaaa---agacataaaaattctcattttgctattggagaatatgta 177  Q
    |||||||||||||||||||||| |||    ||||||||| | |||||||| |||||| ||||||||||    
T  35364634 atttggctagcaaagcaaagaaaaaatatcgacataaaagtcctcatttttctattgaagaatatgta 35364567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 4e-62; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 534 - 731
Target Start/End: Original strand, 3986900 - 3987097
Alignment:
Q  534 aaataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcaccca 633  Q
    ||||||||||||||||| |||||| | |||||||||||    || |||| | | ||||| ||| |||||||| |||||||||||||||||| |||| ||     
T  3986900 aaataggaaaaagataggtagacatcatttttcatacatttattatgtataccccatgtattaagggtatttgagtaattttacatcatattatcatccc 3986999  T
Q  634 ttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3987000 ttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataagagctct 3987097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 538 - 731
Target Start/End: Original strand, 3118045 - 3118239
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtaca-tctcatgtgttaggggtattttagtaattttacatcatatcatcacccattt 636  Q
    ||||||||||||| |||||| | ||||||||||| |  || |||||| || ||||| ||||||||||||||||||||||||||||| ||| ||||| |||    
T  3118045 aggaaaaagataggtagacatcctttttcatacatctcttatgtacactcccatgtattaggggtattttagtaattttacatcatgtcaccaccctttt 3118144  T
Q  637 tcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    | |||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  3118145 ttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataagagctct 3118239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 540 - 730
Target Start/End: Complemental strand, 14023124 - 14022934
Alignment:
Q  540 gaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccattttca 639  Q
    ||||||||||| |||||||| ||||| |||||||     |||||| ||||||||||||||||||||||||||||| |||||| ||| |||||| || |||    
T  14023124 gaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtca 14023025  T
Q  640 tctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||    
T  14023024 tctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataatagctc 14022934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 538 - 730
Target Start/End: Complemental strand, 24208636 - 24208444
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||| |||||| | ||||| |||||||  |  | |||| ||||||||||||||||||||||||||||| |||||| ||| |||||| ||||    
T  24208636 aggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||  |||||| ||||||| | ||||| |||||||| |||||    
T  24208536 catctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataacagctc 24208444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 538 - 730
Target Start/End: Complemental strand, 13697760 - 13697569
Alignment:
Q  538 aggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatttt 637  Q
    ||||||||||||| |||| | | |||||||||||  | || |||||| | |||||||||| | |||||||||||||||| ||||||||||||||| ||||    
T  13697760 aggaaaaagataggtagagatcatttttcatacattacttatgtacaccccatgtgttagagatattttagtaattttatatcatatcatcacccgtttt 13697661  T
Q  638 catctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctc 730  Q
    ||||||||||||||||||||||  ||||| |||||||||||| | ||||||||| |||| ||| || ||||| ||||| ||||||||||||||    
T  13697660 catctcttctttcaatgtttttaccacgtatcacaaatgtgtat-ggtgtaaaagggtgcatgtcatctaagatggtttatgtataagagctc 13697569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 536 - 731
Target Start/End: Original strand, 15345656 - 15345849
Alignment:
Q  536 ataggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacatcatatcatcacccatt 635  Q
    |||||||||| |||| |||||| ||||||||||||||   || |||||| |  |||| ||||||| |||| |||||||| | ||||||||||||||  ||    
T  15345656 ataggaaaaaaataggtagacatcttttttcatacacttcttatgtacaccctatgtattaggggcatttgagtaatttgatatcatatcatcacctttt 15345755  T
Q  636 ttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataagagctct 731  Q
    ||||||| ||||||||||||||||| |||||||||||||  ||| |||||||||||  || ||||||||||||||||||| |||||||||||||||    
T  15345756 ttcatcttttctttcaatgtttttgccacgtgtcacaaa--tgtatgggtgtaaaagagtatatgccacctaaggtggttgatgtataagagctct 15345849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 701 - 731
Target Start/End: Original strand, 7674598 - 7674628
Alignment:
Q  701 ccacctaaggtggttcatgtataagagctct 731  Q
    |||||||||||||||||||||||||||||||    
T  7674598 ccacctaaggtggttcatgtataagagctct 7674628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 121; Significance: 2e-61; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 537 - 726
Target Start/End: Original strand, 87160 - 87350
Alignment:
Q  537 taggaaaaagatagatagacaccttttttcatacaccatttgtgtacatctcatgtgttaggggtattttagtaattttacat--catatcatcacccat 634  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||||| ||   ||||||||||   |    
T  87160 taggaaaaagataggtagacaccttttttcatacaccttttatgtacaccccatgtgttaggggtattttagtaattttatattatatatcatcactatt 87259  T
Q  635 tttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgccacctaaggtggttcatgtataaga 726  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  87260 tttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgt-ggtgtacaagggtgtatgccacctaaggtggttcatgtataaga 87350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 665 - 703
Target Start/End: Complemental strand, 5981 - 5943
Alignment:
Q  665 gtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgcca 703  Q
    |||||||||||||| |||||||||||| |||||||||||    
T  5981 gtgtcacaaatgtgcgtgggtgtaaaagggtgtatgcca 5943  T

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