View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10189_high_2 (Length: 738)

Name: NF10189_high_2
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10189_high_2
NF10189_high_2
[»] chr2 (1 HSPs)
chr2 (38-723)||(10917283-10917977)


Alignment Details
Target: chr2 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 38 - 723
Target Start/End: Original strand, 10917283 - 10917977
Alignment:
Q  38 agaaaggcatgaaagtaaaacaaagataaaaggataaattgcataaaaggcttgtttaatttatttatgtgttcaagaattgtacaaatattgtatttat 137  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  10917283 agaaagacatgaaagtaaaacaaagataaaatgataaattgcataaaaggcttgtttaatttatttatgtgttcaagaattgtacaagtattgcatttat 10917382  T
Q  138 aagcaaaacattgtggtctacaaaatttagcttgctcgactaattacgcgggtaccgcatggttcttcctgattgtttagagtatgcgacaccccatgtt 237  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  10917383 aagcaaaacattgtggtctacaaaatttagcttgcttgactaattacgcgggtaccgcatggttcttcttgattgttgagagtatgcgacaccccatgtt 10917482  T
Q  238 t---------tttcctcttttgcaatatttcatgttttttccatgtgcgcattacctctgcctatgtgcctataacaatgttcgagtagttgcgctataa 328  Q
    |         |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  10917483 tcccttgatttttcctctttcgcaacatttcatgttttttccatgcgcgcattacctctgcctatgtgccaataacaacgttcgagtagttgcgctataa 10917582  T
Q  329 acatgaaacaagagtaaactatcaaattatcaagttataacgaggatgtgaaattacaaatataacatagttgcaattaggagtgccacccaaatacagt 428  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10917583 acatgaaacacgagtaaactatcaaattatcaagttataacgaggatgtgaaattacaaatataacatagttgcaattaggagtgccacccaaatacagt 10917682  T
Q  429 gtgggacaggggtagaaaagtcaatatagtaattataaagaagggatattgccctagagggcccatacgctgcgctttgtacacatgaacaaaactaacg 528  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  10917683 gtgggacaggggtagaaaagtcaatatagtaattataaagaagggatgttgccctagagggcccatacgctgcgctttgaacacatgaacaaaactaacg 10917782  T
Q  529 gctgatattaaactactttcataatccaagggctagtacactcacacgctacacacccccttcatatataaatctttcagaaattcagcttcatccacag 628  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10917783 gctgatattaatccactttcataatccaagggctagtacactcacacgctacacacccccttcatatataaatctttcagaaattcagcttcatccaccg 10917882  T
Q  629 agcgcctcaatctatttccagtatctagggtttactcctcatcacacatccgaacggcgcaaaatggtaaatccattctctctccactgttttct 723  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10917883 agcgcctcaatctatttccagtatctagggtttacttctcatcacacatccgaacggcgcaaaatggtaaatccattctctctccactgttttct 10917977  T

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