View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_high_23 (Length: 231)
Name: NF10189_high_23
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_high_23 |
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| [»] chr4 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 6631648 - 6631892
Alignment:
| Q |
1 |
tcatcaacaaagggaacttcaacaaaaacaatagactcaggaatagtagtggggagtgcactctcaattaaactaccctgagctaaggaagagg------ |
94 |
Q |
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| T |
6631648 |
tcatcaacaaagggaacttcaacaaaaacaatagactcaggaatagtagtggggagtgcactctcaattaaactaccctaagctaaggaagagggacctg |
6631747 |
T |
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| Q |
95 |
--------gatgccttcttcccattaacaggacccaaaaaagggttacatgtactcaaatcaacaaggttagatttcatatttgtcatgttaccagtact |
186 |
Q |
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| T |
6631748 |
taatgagggatgccttcttcccattaacaggacccaaaaaagggttacatgtactcaaatcaacaaggttagatttcatatttgtcatgttaccagtact |
6631847 |
T |
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| Q |
187 |
ctctaagattgtgttatgagtaaattcctccttccttagtaaatt |
231 |
Q |
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| T |
6631848 |
ctctaagattgtgttatgagtaaattcctccttccttagtaaatt |
6631892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 7906393 - 7906533
Alignment:
| Q |
91 |
gagggatgccttcttcccattaacaggacccaaaaaagggttacatgtactcaaatcaacaaggttagatttcatatttgtcatgttaccagtactctct |
190 |
Q |
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| T |
7906393 |
gagggatgccttcttcccattgaccgggcccaatagagggttacttgaactcaaagcaacaaagttagagttcctttttaccaagttaccagtactatct |
7906492 |
T |
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| Q |
191 |
aagattgtgttatgagtaaattcctccttccttagtaaatt |
231 |
Q |
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| T |
7906493 |
aagtttgtgttgtgattcaagtcctccttccttagtgaatt |
7906533 |
T |
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