View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_high_6 (Length: 431)
Name: NF10189_high_6
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 422
Target Start/End: Complemental strand, 40924808 - 40924360
Alignment:
| Q |
18 |
aagaattctgagacaagctgggaaggaccaagaacaaggcatgttgtcgtcaatgggaaactagctagctgttgctgattgaaattggagggttttgaat |
117 |
Q |
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| T |
40924808 |
aagaattctgagacaagctgggaaggaccaagaacaaggcacgt---cgtcaatgggaaactagctagctgttgctgattgaaattggcgggttttgaat |
40924712 |
T |
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| Q |
118 |
gatacatggtcggaatgaagttttctgtggagcacttgctagtatttttatg---------------------ttttctggtttgcaattctaccttgtt |
196 |
Q |
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| T |
40924711 |
gatatatggtcggaatgaagttttctgtggagcacttgctagtatttttatgctattttattattattttatgttttctggtttgcaattctaccttgtt |
40924612 |
T |
|
| Q |
197 |
gtttcaagaattatcatcttcatataggacacttcagttaatatttctgttaattttgttgaagttctgataattacttagtatttagtttaatcattgt |
296 |
Q |
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| T |
40924611 |
gtttcaagaattatcatcttcatataggacacttcagttaatatttctgttaattttgttgaagttctgataattacttagtatttagtttaaccattgt |
40924512 |
T |
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| Q |
297 |
tattaaccggtttttaaaca--------------ctgcggatctatgttagattttgagttgattgacaaaaatttatattagcatgctcggtgttagtt |
382 |
Q |
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| T |
40924511 |
tattaactggttcttaaacactgcaaatatgtgactgcggatctatgttagattttgagttgattgacaaaaatttatattagcatgctcggtgttagtt |
40924412 |
T |
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| Q |
383 |
aacaa------------ggatacatcgatactatatgggacaatcttcttct |
422 |
Q |
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| T |
40924411 |
aacaagtaatatttgagggatacatcgatactatatgggacaatcttcttct |
40924360 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 34990727 - 34990691
Alignment:
| Q |
227 |
acttcagttaatatttctgttaattttgttgaagttc |
263 |
Q |
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| T |
34990727 |
acttcagttaatatttctgttaattttgttgaagttc |
34990691 |
T |
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