View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_high_9 (Length: 331)
Name: NF10189_high_9
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 32824698 - 32824992
Alignment:
| Q |
18 |
aatcaaaacctctcacactgatctgagtacatttccatgaagaatctatccacaatttcaacataagcaggacaagttagtcttgaatagtaataaagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824698 |
aatcaaaacctctcacactgatctgagtacatttccatgaagaatctatccacaatttcaacataagcaggacaagttagtcttgaatagtaataaagaa |
32824797 |
T |
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| Q |
118 |
cctcttcaatatccattgcataatccacattgcttatatccaacatctctaactccctcaatttctctttcaccatacaatattttctttctttcatatc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824798 |
cctcttcaatatccattgcataatccacattgcttatatccaacatctccaactccttcaatttctctttcaccatacaatattttctttctttcatatc |
32824897 |
T |
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| Q |
218 |
cttagaagtaaatgatgaatctttttgctttcctctttgaatggtcaatttcttctcattgtttttgttgtcgaaaacctctcttttattcgccc |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32824898 |
cttagaagtaaatgatgaatctttttgctttcctctttgaatggtcaatttcttctcattgtttttgttgtcgaaaacctctcttttattcgccc |
32824992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 43565831 - 43565713
Alignment:
| Q |
45 |
tacatttccatgaagaatctatccacaatttcaacataagcaggacaagttagtcttgaatagtaataaagaacctcttcaatatccattgcataatcca |
144 |
Q |
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|||||||||| ||||||| |||| |||||||||| ||| | ||||||||| || || |||||||||| ||||||||||||||| || | | |||||||| |
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| T |
43565831 |
tacatttccacgaagaatttatcaacaatttcaagatacgaaggacaagtgagcctagaatagtaatgaagaacctcttcaatgtctaatatataatcca |
43565732 |
T |
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| Q |
145 |
cattgcttatatccaacat |
163 |
Q |
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|||| || || |||||||| |
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| T |
43565731 |
cattactcatctccaacat |
43565713 |
T |
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