View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10189_low_12 (Length: 302)
Name: NF10189_low_12
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 42671505 - 42671762
Alignment:
| Q |
22 |
agaaatagaagagaaagccttaatcaacacgggttccacaaattttctcttctcccttaaacggctaagaaagcttcacattttcatctgtttccttttt |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
42671505 |
agaaatagaagagaaagccttaatcaacatgggttccacaaattttctcttcaaccttaaaccgcgaagaaagcttcacattttcatctgtttccttttt |
42671604 |
T |
|
| Q |
122 |
tgtattctttgtctgcaaaccaaaccatgaaagtattttcatttttcccatctagcatagaaccgttttttctgttgcaaagacctgacaactttatttc |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42671605 |
tgtattctttgtctgcaaa-----ccatgaaagtattttcatttttcccatctagcatagaaccgttttttctgttgcaaagacctgacaactttatttt |
42671699 |
T |
|
| Q |
222 |
ttctcaaaataatctccttgtatctatcccatcgaaggaaacggtgatccctcccttgcttct |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42671700 |
ttctcaaaataatctccttgtatctatcccatcgaaggaaacggtgatccctcccttgcttct |
42671762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University