View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10189_low_20 (Length: 254)
Name: NF10189_low_20
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 12945388 - 12945185
Alignment:
| Q |
1 |
cacttggctcaaatgatttccttgataactatttagcacgtacaaagcaagagagagagttgttacctctaaacaaatttgtcgagacaatgatatcaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
12945388 |
cacttggctcaaatgatttccttgataactatttagcacgtacaaagcaagagagagagttgttacctccagacaaatttgtcgagacaatgatatcaaa |
12945289 |
T |
|
| Q |
101 |
actctgggtacaactcacggtaatatttccaagaccctataacattttcttacaagactgttattattttttaacattttcatacctgaagttttaaaaa |
200 |
Q |
| |
|
|||| | ||||||||||||||||| || |||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
12945288 |
actcagagtacaactcacggtaattttgccaa-accctataacattttctatcaagactattgttattttttaaaattttcatacttgaagttttaaaaa |
12945190 |
T |
|
| Q |
201 |
gctca |
205 |
Q |
| |
|
|||| |
|
|
| T |
12945189 |
actca |
12945185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University