View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10189_low_22 (Length: 250)

Name: NF10189_low_22
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10189_low_22
NF10189_low_22
[»] chr7 (12 HSPs)
chr7 (1-240)||(22879152-22879391)
chr7 (1-240)||(22813542-22813781)
chr7 (1-240)||(22896784-22897023)
chr7 (1-240)||(22892468-22892707)
chr7 (1-146)||(22887907-22888052)
chr7 (1-146)||(22803945-22804090)
chr7 (1-146)||(22829640-22829785)
chr7 (1-146)||(22870443-22870588)
chr7 (1-146)||(22808229-22808374)
chr7 (1-146)||(22874537-22874682)
chr7 (1-146)||(22838661-22838806)
chr7 (1-83)||(22912331-22912413)
[»] chr1 (1 HSPs)
chr1 (1-127)||(21151960-21152086)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22879391 - 22879152
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22879391 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtgcagtatttggagagggatatacctttgccagattt 22879292  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaaannnnnnnngaggactttcctttgtcttatccttcttctatggacaagaaaatg 200  Q
    |||||||| ||||||||||| |||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||||||||    
T  22879291 gtctttgcctagtttatcttcttctggattaacttttgggaacaaatatttttttgaggactttcctttgtcttatccttcttctatggacaagaaaatg 22879192  T
Q  201 tcgcatacgtctgtgtctattgctgattcacttctctctg 240  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  22879191 tcgcatacgtctgtgtctcttgctgattcacttctctctg 22879152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22813781 - 22813542
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  22813781 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtgcagtatttggagcgggatatacctttgccagattt 22813682  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaaannnnnnnngaggactttcctttgtcttatccttcttctatggacaagaaaatg 200  Q
    | ||| |||||||||||||| ||||||||||||||||||| |||||         ||||||||||||||||| ||||||||||| |||||||||| ||||    
T  22813681 gccttcgcttagtttatcttcttctggattaacttttgggtaccaagaatattttgaggactttcctttgtcgtatccttcttccatggacaagacaatg 22813582  T
Q  201 tcgcatacgtctgtgtctattgctgattcacttctctctg 240  Q
    || ||||| ||||| |||||| ||||||||||||||||||    
T  22813581 tcacatacttctgtttctatttctgattcacttctctctg 22813542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22897023 - 22896784
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||| |||||||||||||| ||||||||    
T  22897023 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtacagtatttggaaagggatatacctttaccagattt 22896924  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaaannnnnnnngaggactttcctttgtcttatccttcttctatggacaagaaaatg 200  Q
    |||||||||||||||||||| |||||| |||||||||||| |||||         |||||||||||||||||||||||||||||||||| ||| | ||||    
T  22896923 gtctttgcttagtttatcttcttctggtttaacttttgggtaccaagaattttttgaggactttcctttgtcttatccttcttctatgggcaacacaatg 22896824  T
Q  201 tcgcatacgtctgtgtctattgctgattcacttctctctg 240  Q
    || || || |||||||||||||||||||||||||||||||    
T  22896823 tcacacacctctgtgtctattgctgattcacttctctctg 22896784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 22892707 - 22892468
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22892707 tgaaacttggattgttgtgttcacattcagaacctttggctagaccatgtatgagacaagttgtgcagtatttggagagggatatacctttgccagattt 22892608  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaaannnnnnnngaggactttcctttgtcttatccttcttctatggacaagaaaatg 200  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||         |||||||||||||||||||||||||| ||||||| ||| | ||||    
T  22892607 gtctttgcttagtttatcttcttctggattaacttttgggtaccaagaattttttgaggactttcctttgtcttatccttcctctatgggcaacacaatg 22892508  T
Q  201 tcgcatacgtctgtgtctattgctgattcacttctctctg 240  Q
    || || || |||||||||||||| || ||| |||||||||    
T  22892507 tcacagacttctgtgtctattgccgactcaattctctctg 22892468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22888052 - 22887907
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||    
T  22888052 tgaaacttggcttgttgtgttcacattcagagcctttggctagaccaagtatgagacaagttgtacagtatttggagagggatacacctttgccagattt 22887953  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaa 146  Q
     |||| |||||||||||||| |||||| |||||||||||| |||||    
T  22887952 ttcttcgcttagtttatcttcttctggtttaacttttgggtaccaa 22887907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22804090 - 22803945
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||    
T  22804090 tgaaacttggcttgatgtgttcacattcagagcctttggctagaccaagtatgagacaagttgtgcagtatttggagagggatttacctttaccagattt 22803991  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaa 146  Q
    ||| ||||||||||||||||  | |||||||||||||||| |||||    
T  22803990 gtcattgcttagtttatcttcctatggattaacttttgggcaccaa 22803945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22829785 - 22829640
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  22829785 tgaaacttggattgttgtgttcacattcagaacctttggctagaccaggtatgagacaagttgtgcagtatttggagagggatatacctttgccatattt 22829686  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaa 146  Q
    || || |||||||||||||| |||||| |||  ||||||| |||||    
T  22829685 gttttcgcttagtttatcttcttctggtttattttttgggtaccaa 22829640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22870588 - 22870443
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||    
T  22870588 tgaaacttggcttgatgtgttcacattcagagcctttggctagaccaagtatgagacaagttgtgcagtatttggagagggatatacctttaccagcttt 22870489  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaa 146  Q
    ||| ||||||||||||||||  | |||||||||||||||| |||||    
T  22870488 gtcattgcttagtttatcttcctatggattaacttttgggcaccaa 22870443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22808374 - 22808229
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    |||||||||| ||||||||||  |||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  22808374 tgaaacttggcttgttgtgtttgcattcagagcctctggttagaccaagtatgagacaagttgtgcagtatttggagagggatatagctttgccagattt 22808275  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaa 146  Q
    ||||| |||||||||||||| |||||| |||||||||||| |||||    
T  22808274 gtcttcgcttagtttatcttcttctggtttaacttttgggtaccaa 22808229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22874682 - 22874537
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  22874682 tgaaacttggattgttgtgttctcattcagagcctttggctagaccaagcatgaggcaagttgtgcagtatttggagagggatatacctttgccagattt 22874583  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaa 146  Q
     |||| |||||||||||||| || ||| |||||||||||| |||||    
T  22874582 ttcttcgcttagtttatcttcttttggtttaacttttgggtaccaa 22874537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 22838806 - 22838661
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| || ||||||||    
T  22838806 tgaaacttggattgttgtgttctcattcagagcctttggctagaccaagtatgaggcaagttgtgcagtatttggagacggatataccctttccagattt 22838707  T
Q  101 gtctttgcttagtttatcttattctggattaacttttgggaaccaa 146  Q
    ||||| |||||||||||||  || ||| |||||||||||| |||||    
T  22838706 gtcttcgcttagtttatctacttttggtttaacttttgggtaccaa 22838661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22912413 - 22912331
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggat 83  Q
    |||||||||||||||| ||||||||||  ||  ||||||||||||||||||||||||||||| ||  ||||||||||||||||    
T  22912413 tgaaacttggtttgttatgttcacattgtgaggctttggctagaccaagtatgagacaagttttgaggtatttggagagggat 22912331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 21151960 - 21152086
Alignment:
Q  1 tgaaacttggtttgttgtgttcacattcagaacctttggctagaccaagtatgagacaagttgtgctgtatttggagagggatatacctttgccagattt 100  Q
    |||||||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  21151960 tgaaacttggcttgttgtgttcacattccgagcctttggctagaccaagtatgaggcaagttgtgcagtatttggagagggatatacctttgccagattt 21152059  T
Q  101 gtctttgcttagtttatcttattctgg 127  Q
    |||||  ||||||||||||| ||||||    
T  21152060 gtcttcacttagtttatcttcttctgg 21152086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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