View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10189_low_24 (Length: 246)

Name: NF10189_low_24
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10189_low_24
NF10189_low_24
[»] chr4 (3 HSPs)
chr4 (146-239)||(6635033-6635126)
chr4 (82-185)||(36893471-36893574)
chr4 (82-154)||(6632200-6632272)
[»] chr6 (2 HSPs)
chr6 (82-155)||(32092071-32092144)
chr6 (161-239)||(32092250-32092328)
[»] chr7 (2 HSPs)
chr7 (90-153)||(13579873-13579936)
chr7 (88-153)||(13585413-13585478)
[»] chr8 (1 HSPs)
chr8 (91-145)||(35037562-35037616)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 6635033 - 6635126
Alignment:
Q  146 attaaattgtcacaggtatgaaacacacttgctgagtagctttgattttcaaattgttggtttttgaaaattatgatatctttgtacacctatg 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6635033 attaaattgtcacaggtatgaaacacacttgctgagtagctttgattttcaaattgttggtttttgaaaattatgatatctttgtacatctatg 6635126  T

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Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 36893471 - 36893574
Alignment:
Q  82 cctgtcatgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaattgtcacaggtatgaaacacacttgctgag 181  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  36893471 cctgttatgcagatttgtttagagatatgctttgagccaagtaccaccccttgttgtcacagatattaaattgtcacgggtatgaaacacacttgctgag 36893570  T
Q  182 tagc 185  Q
    ||||    
T  36893571 tagc 36893574  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 6632200 - 6632272
Alignment:
Q  82 cctgtcatgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaattg 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6632200 cctgtcatgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaattg 6632272  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 32092071 - 32092144
Alignment:
Q  82 cctgtcatgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaattgt 155  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32092071 cctgttatgcagatttgtttagagatatgctttgagtcaagtaccactccttgttgtcacaggtattaaattgt 32092144  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 239
Target Start/End: Original strand, 32092250 - 32092328
Alignment:
Q  161 gtatgaaacacacttgctgagtagctttgattttcaaattgttggtttttgaaaattatgatatctttgtacacctatg 239  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  32092250 gtatgaaacacacttgctgagttgctttgattttcaaattgttagtttttgaaaattatgatttctttgtccacttatg 32092328  T

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Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 13579873 - 13579936
Alignment:
Q  90 gcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaatt 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13579873 gcagatttgtttagagatatgctttgagccaagtaccactccttgtggtcacaggtattaaatt 13579936  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 13585413 - 13585478
Alignment:
Q  88 atgcagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggtattaaatt 153  Q
    |||||||| ||||| ||| ||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  13585413 atgcagatgtgttttgagttattctttgagccaagtaccactccttgtggtcacaggtatcaaatt 13585478  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 35037616 - 35037562
Alignment:
Q  91 cagatttgtttagagatatgctttgagccaagtaccactccttgttgtcacaggt 145  Q
    ||||||||||||||||||| |||||||||| ||||||| | |||| |||| ||||    
T  35037616 cagatttgtttagagatattctttgagccatgtaccacccgttgtggtcataggt 35037562  T

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