View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_low_27 (Length: 239)
Name: NF10189_low_27
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_low_27 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37516840 - 37517076
Alignment:
| Q |
1 |
gcatactggaaatgtatcagttatcaactataatcagcattttgttaataataatatatctttgaaagtaatcataggtttaaaccatatcaagcatagt |
100 |
Q |
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| T |
37516840 |
gcatactggaaatgtatcagttatcaactataatcagcattttgttaataatgatatatctttgaaagtaatcataggtttaaaccatatcaagcatagt |
37516939 |
T |
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| Q |
101 |
tgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgactggttctatatatctagcacaccactagagga |
200 |
Q |
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| T |
37516940 |
tgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaagacatgtgaatggttctatatatctagcacaccactagagga |
37517039 |
T |
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| Q |
201 |
agaaatactttcacatttagtatatattttagaacttaa |
239 |
Q |
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| T |
37517040 |
agaaatactttcacatttag--tatattttagaacttaa |
37517076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 14843068 - 14843234
Alignment:
| Q |
59 |
tctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaa |
158 |
Q |
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| T |
14843068 |
tctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatgaaccaattccttccaaaagcttaagccatgctgaa |
14843167 |
T |
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| Q |
159 |
gacatgtgactggttctatatatctagcacaccactagaggaagaaatactttcacatttagtatat |
225 |
Q |
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| T |
14843168 |
gacatgtgaatggttctatatatctagcacaccactagaggaagaaatactttcacatttagtatat |
14843234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14843028 - 14843068
Alignment:
| Q |
1 |
gcatactggaaatgtatcagttatcaactataatcagcatt |
41 |
Q |
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| T |
14843028 |
gcatactggaaatgtatcagttatcaactataatcagcatt |
14843068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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