View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_low_28 (Length: 238)
Name: NF10189_low_28
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41785559 - 41785783
Alignment:
| Q |
1 |
ttgagttgatgatttgttcctttcggttctgttttatttttcatttagcaagaaacatcaaaa-aattaagcagttagagagtttggtgagcaaaattga |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||| |
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| T |
41785559 |
ttgagttgatgatttgttcctttcggttctgttttatttttcatttagcaagaaacataaaaaaaattaagcagttagagagtttggtgagcagaattga |
41785658 |
T |
|
| Q |
100 |
agattcgttaatgtttaagtgaatcttaaattaatcataattaactgccaaaacaatatcaaattcgttcacatcttacatcaaaattgatttgttttat |
199 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41785659 |
agattcgttaatgtttgagtgaatcttaaattaaccataattaactgccaaaacaatatcaaattcgttcacatcttacatcaaaattgatttgttttat |
41785758 |
T |
|
| Q |
200 |
gcacgttatattgttagggaaaggt |
224 |
Q |
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||||||||||||||||||||||||| |
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| T |
41785759 |
gcacgttatattgttagggaaaggt |
41785783 |
T |
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