View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_low_30 (Length: 235)
Name: NF10189_low_30
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 35525098 - 35524974
Alignment:
| Q |
14 |
agacacgtaatccctgtatttttcacgagacacacattatcaaaacttagaaataaatgttgtatcaatctaaagcttcatatgcaactttaaggcaaaa |
113 |
Q |
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| T |
35525098 |
agacacataatccctgtatttttcacgagacacacattatcaaaacttagaaataaatgttgcatcaatctaaagcttcatatgcaactttaaggcaaaa |
35524999 |
T |
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| Q |
114 |
atcagataagttaaaattggaggac |
138 |
Q |
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| T |
35524998 |
atcagataagttaaaattggaggac |
35524974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 35521520 - 35521411
Alignment:
| Q |
14 |
agacacgtaatccctgtatttttcacgagacacacattatcaaaacttagaaataaatgttgtatcaatctaaagcttcatatgcaactttaagg-caaa |
112 |
Q |
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|||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |
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| T |
35521520 |
agacacataattcctgtatttttcacaagacacacattatcaaaacttagaaataaatgttgcatcaatctaaagcttcatat--aactttaaggaaaaa |
35521423 |
T |
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| Q |
113 |
aatcagataagt |
124 |
Q |
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|||||||||||| |
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| T |
35521422 |
aatcagataagt |
35521411 |
T |
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