View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_low_32 (Length: 226)
Name: NF10189_low_32
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_low_32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 157 - 226
Target Start/End: Complemental strand, 7509182 - 7509113
Alignment:
| Q |
157 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaa |
226 |
Q |
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| T |
7509182 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttaccaaa |
7509113 |
T |
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Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 27241492 - 27241558
Alignment:
| Q |
157 |
tgaagcaaggtgccaccattctccttaatgcaattcaaaatggggagaggaagaaatttgatttacc |
223 |
Q |
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| T |
27241492 |
tgaatcaatgtgtcaccattcttcttaatgcaattcaaaatggtgagaggaagaaatttgatttacc |
27241558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 27249111 - 27249160
Alignment:
| Q |
170 |
caccattctccttaatgcaattcaaaatggggagaggaagaaatttgatt |
219 |
Q |
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| T |
27249111 |
caccattcttcttaatgcaattcaaaatggcgagaggaagaaattcgatt |
27249160 |
T |
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