View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_low_4 (Length: 552)
Name: NF10189_low_4
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 20 - 542
Target Start/End: Complemental strand, 47585926 - 47585409
Alignment:
| Q |
20 |
caaatatgtaaatttcacaaaagcatacaagtctatatacaaaaaattctcacagttcatgcatgtaataagctaacaacacttcatttacaacatctaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47585926 |
caaatatgtaaatttcacaaaagcatacaagtctatatacaaaaaattctcacagttcatgcatgtaataagctaacaacacttcatttacaacatctaa |
47585827 |
T |
|
| Q |
120 |
aatgccgcctcagggaatgttcttaaattattgttccaaagataatatttgaaggatttacatgtaatatactacatacttttgatagaacaaaaaatcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47585826 |
aatgccgcctcagggaatgttcttaaattattgttccaaagataatatttgaaggatttacatgta---tactacatacttttgatagaacaaaaaatcc |
47585730 |
T |
|
| Q |
220 |
atgtattctcttagatttacctctttgtttttagattcataaatctaacacaaaaaagaagcatggagcttttttctatacaataatacacaatcacttt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47585729 |
atgtattctcttagatttacctctttgtttttagattcataaatctaacacaaaaaagaagcatgaagcttttttctatacaataatacacaatcacttt |
47585630 |
T |
|
| Q |
320 |
cttcatctttcatccaatatctctaagttttgaacaacaaaaagaaagccaaagtacctacaacagactccctaccggcctaattaacagcctttcaaat |
419 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47585629 |
cttcatctttcatccaatatct--aagttttgaacaacaaaaagaaagccaaagtacctacaacagactccctaccggcctaattaacagcctttcaaat |
47585532 |
T |
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| Q |
420 |
ctctccatctaaggtaaattaacccatcacggtaatgtgtatatgcccccgccacaaccaagacatgaaaaagttggtgactatggccagcaatatcaaa |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47585531 |
ctctccatctaaggtaaattaacccatcacggtaatgtgtatatgcccccgccacaaccaagacatgaaaaagttggtgactatggccagcaatatcaaa |
47585432 |
T |
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| Q |
520 |
ctttcccggcatccacctctctg |
542 |
Q |
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||||||||||||||||||||||| |
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| T |
47585431 |
ctttcccggcatccacctctctg |
47585409 |
T |
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