View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_low_5 (Length: 432)
Name: NF10189_low_5
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 7500802 - 7501196
Alignment:
| Q |
18 |
ctactgaaattattcatgatgggtgaagggagttttctttaagcagcaaatgaatatttattaaaatagaaagatgagaatgagtacaagaggtactcct |
117 |
Q |
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| T |
7500802 |
ctactgaaattattcatgatgggtgaagggagttttcttttagcagcaaatgaatatttattaaaatagaaagatgagaatgagtacaagaggtactccc |
7500901 |
T |
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| Q |
118 |
tnnnnnnnnnnnnnnnnngtacaagaggcacaaaacccacaaaatatggtgaaagaaattgttgagttgaacaagctattgttttcaagctatgattcag |
217 |
Q |
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| T |
7500902 |
taaaaaaataaaaaataaatacaagaggcactaaacccacaaaatatggtgaaagaaattgttgagttgaacaagctattgttttcaagctatgattcag |
7501001 |
T |
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| Q |
218 |
gaaattagctttgatattgattagtgttttcagtttaatatctcctttatagttaatttatttacgtattctagctattctcannnnnnnattagc--tn |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7501002 |
gaaattagctttgatattgattagtgttttcagtttaatatctcctttatagttaatttatttacgtattctagctattctcatttttttattagcaaaa |
7501101 |
T |
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| Q |
316 |
nnnnnnnnctaatctcggtttattgccttcttcattctttttgannnnnnnnnaaataataaatttaggatacattatagaaagaacacttagga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7501102 |
aaaaaaaactaatctcggtttattgccttcttcattctttttgatttttttttaaataataaatttaggacacattatagaaagaacacttagga |
7501196 |
T |
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