View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10189_low_8 (Length: 390)
Name: NF10189_low_8
Description: NF10189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10189_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 162 - 374
Target Start/End: Original strand, 12522876 - 12523088
Alignment:
| Q |
162 |
gtagttattgatagttaactttagagtttcatttatattacggtatagatgctatgacattgtcctaacaatgatgaatcaaattcttgcaggaaaagac |
261 |
Q |
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| T |
12522876 |
gtagttattgatagttaactttagagtttcgtttatattatgttatagatgctacgacattgtcctaacaatgatgaatcaaattcttgcaggaaaagac |
12522975 |
T |
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| Q |
262 |
atcacaagaataaatctaaaatctcttagaaaacacattggtcttgtacaacaagaaccagcacttttcgctacatcaatttacgaaaacattctttatg |
361 |
Q |
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| T |
12522976 |
atcacaagaataaatctaaaatctcttagaaaacacattggtcttgtacaacaagaaccagcacttttcgctacatcaatttacgaaaacattctttatg |
12523075 |
T |
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| Q |
362 |
gaaaggaaggtgc |
374 |
Q |
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| T |
12523076 |
gaaaggaaggtgc |
12523088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 12522686 - 12522852
Alignment:
| Q |
1 |
cacaacacttttttcttgcata--acaagttaatcattctagaacatgtttattgaacatgtgtgaacctaccatcaactattaatatacttttcatcat |
98 |
Q |
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| T |
12522686 |
cacagcacttttttcttgcatataacaagttaatcattctagagcatgtttattgaacatgtgtgaacctaccatcaactattaatatacttttcatcat |
12522785 |
T |
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| Q |
99 |
aaaattagcagaaagacaagcaagttaaggataa--ttgtctaatagaatgtccggccgaaattagtagttattg |
171 |
Q |
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| T |
12522786 |
aaaattagcggaaag--------gctaatgataattttgtctaatagaatgtccgtccaaaattagtagttattg |
12522852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 370
Target Start/End: Original strand, 27731011 - 27731130
Alignment:
| Q |
251 |
caggaaaagacatcacaagaataaatctaaaatctcttagaaaacacattggtcttgtacaacaagaaccagcacttttcgctacatcaatttacgaaaa |
350 |
Q |
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| T |
27731011 |
caggaaaagatatcaagaaaatgaatttgaaatcccttaggaagcaaattgggctagtacaacaagaaccagctctatttgcaacatcaatttacaaaaa |
27731110 |
T |
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| Q |
351 |
cattctttatggaaaggaag |
370 |
Q |
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|||||| |||||||| |||| |
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| T |
27731111 |
cattctatatggaaaagaag |
27731130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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