View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1018_high_1 (Length: 1114)

Name: NF1018_high_1
Description: NF1018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1018_high_1
NF1018_high_1
[»] chr6 (16 HSPs)
chr6 (97-619)||(28154464-28154988)
chr6 (832-1114)||(28154185-28154467)
chr6 (602-830)||(28246027-28246255)
chr6 (602-830)||(28328269-28328497)
chr6 (602-830)||(28505905-28506133)
chr6 (602-828)||(28239048-28239274)
chr6 (602-830)||(28524905-28525133)
chr6 (602-764)||(28191138-28191300)
chr6 (1001-1091)||(28178237-28178327)
chr6 (576-646)||(28192456-28192525)
chr6 (1017-1091)||(28224299-28224373)
chr6 (626-785)||(28142352-28142511)
chr6 (97-156)||(28179496-28179555)
chr6 (1003-1091)||(29828442-29828530)
chr6 (719-790)||(28095794-28095865)
chr6 (97-170)||(28143032-28143105)
[»] scaffold0038 (3 HSPs)
scaffold0038 (602-830)||(46189-46417)
scaffold0038 (602-828)||(39210-39436)
scaffold0038 (1017-1091)||(24797-24871)
[»] scaffold0019 (1 HSPs)
scaffold0019 (602-812)||(55513-55723)
[»] chr5 (1 HSPs)
chr5 (626-770)||(16693892-16694036)
[»] chr4 (1 HSPs)
chr4 (619-750)||(5088325-5088456)
[»] chr2 (1 HSPs)
chr2 (719-790)||(3282422-3282493)
[»] chr8 (1 HSPs)
chr8 (707-782)||(16352164-16352239)


Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 97 - 619
Target Start/End: Complemental strand, 28154988 - 28154464
Alignment:
Q  97 aggatcagtgaattgaatatccgccatgctacttttctgctttgatacatggattccaaaatctgtaaagagtgttgttatcatctaagacctgcatgta 196  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  28154988 aggatcggtgaattgaatatccgccatgctacttttctgctttaatacatggattccaaaatctgtaacgagtgttgtcatcatcaaagacctgcatgta 28154889  T
Q  197 atctctacatggatccattcatttttcagaagtgcattgtgcagtatagaattgaaccgcatatcctctagttgaagatcgtatagatatgtattattcg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  28154888 atctctacatggatccattcatttttcagaagtgcattgtgcagtatagaattgaaccgcatatcctccagttgaagatcgtatagatacgtattattcg 28154789  T
Q  297 gttc--------------taccatgtccaagaccactttgacagtcatagtctttgatgaacagattgggtcttaatgaatgaaattcactgagggagta 382  Q
    ||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154788 gttctaccccgatattactaccatgtccaagaccactttgacagtcatagtctttgatgaacagattgggtcttaatgaatgaaattcactgagggagta 28154689  T
Q  383 ccagaattaaattcattgtcccgtgctttggtgctcaaaccactccagaatccttgcagatcctgccatacgaatgttcgtatttccagatatatgcagc 482  Q
    |||||||||||| ||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154688 ccagaattaaataca------------ttggtgctcaaaccactccagaatccttgcagatcctgccatacgaatgttcgtatttccagatatatgcagc 28154601  T
Q  483 tcctgttagtcataaataatttataagattaccaacataaattacaatatgctatgaaatgtaaaatgaaatttttaagcaagnnnnnnnnnncttattt 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |          |||||||    
T  28154600 tcctgttagtcataaataatttataagattaccaacataaattacaatatgctatgaaatgtaaaatgaaatttttaagcatgaaaataaaaacttattt 28154501  T
Q  583 agtagcattctcctgcaaagaggaagtcaatgatttg 619  Q
    |||||||||||||||||||||||||||||||||||||    
T  28154500 agtagcattctcctgcaaagaggaagtcaatgatttg 28154464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 832 - 1114
Target Start/End: Complemental strand, 28154467 - 28154185
Alignment:
Q  832 tttgagcagaagttgtcgtacatttgtagacaggatggaattcagcttaacattttggtttggcaataatagaccgccctcaatagtaatccatgacaat 931  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154467 tttgagccgaagttgtcgtacatttgtagtcaggatggaattcagcttaacattttggtttggcaataatagaccgccctcaatagtaatccatgacaat 28154368  T
Q  932 tttggcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaact 1031  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154367 tttggcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaact 28154268  T
Q  1032 cttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatatttgagactagaacaacatgagagat 1114  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154267 cttctattgaagttcccaccaaaacaagtgataagatattttccatctctcctaatatttgagactagaacaacatgagagat 28154185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 602 - 830
Target Start/End: Complemental strand, 28246255 - 28246027
Alignment:
Q  602 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 701  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  28246255 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcacttgcaatcatccaacctaagag 28246156  T
Q  702 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 801  Q
     |||||||||| |||| ||||||||||||||||||||||| ||||||||  |   ||||||||||||| |||| ||||| | | ||||||||| ||  ||    
T  28246155 accataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactat 28246056  T
Q  802 tgcaagaaattcttatgacaagctgcatt 830  Q
    || ||||||||| | ||||||| ||||||    
T  28246055 tggaagaaattcatctgacaagttgcatt 28246027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 602 - 830
Target Start/End: Complemental strand, 28328497 - 28328269
Alignment:
Q  602 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 701  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||| ||||||||   ||||     
T  28328497 gaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatgtaagct 28328398  T
Q  702 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 801  Q
     | | |||||| |||| ||||||||||||||||||||||| |||||| || | | |||||||| |||   ||||||||||| | ||||||||| ||| ||    
T  28328397 tcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttccacattagcagaccacatgacaagtat 28328298  T
Q  802 tgcaagaaattcttatgacaagctgcatt 830  Q
    || ||||||||| | ||||||| ||||||    
T  28328297 tggaagaaattcatctgacaagttgcatt 28328269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 602 - 830
Target Start/End: Complemental strand, 28506133 - 28505905
Alignment:
Q  602 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 701  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||| ||||||||   ||||     
T  28506133 gaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatgtaagct 28506034  T
Q  702 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 801  Q
     | | |||||| |||| ||||||||||||||||||||||| |||||| || | | |||||||| |||   ||||||||||| | ||||||||| ||| ||    
T  28506033 tcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttccacattagcagaccacatgacaagtat 28505934  T
Q  802 tgcaagaaattcttatgacaagctgcatt 830  Q
    || ||||||||| | ||||||| ||||||    
T  28505933 tggaagaaattcatctgacaagttgcatt 28505905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 602 - 828
Target Start/End: Complemental strand, 28239274 - 28239048
Alignment:
Q  602 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 701  Q
    |||||| ||||||||||||||  |  ||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||   |||      
T  28239274 gaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcatttgcaatcatccaatataagat 28239175  T
Q  702 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 801  Q
     |  ||||||| |||| ||||||||||||||||||||||| ||||||||| | | |||||||| ||| | |  |||||||| | ||||||||| ||  ||    
T  28239174 ccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattat 28239075  T
Q  802 tgcaagaaattcttatgacaagctgca 828  Q
    || ||||||||| | ||||||| ||||    
T  28239074 tggaagaaattcatctgacaagatgca 28239048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 602 - 830
Target Start/End: Complemental strand, 28525133 - 28524905
Alignment:
Q  602 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 701  Q
    ||||||||||| ||||||||||||| ||||||||| | |  ||||||||| || | |||||||||||||| ||| || ||||| ||||||||   |||      
T  28525133 gaggaagtcaaggatttgcagcctattgcagacaagtatgctaaatttggcggcatccctctaatttctctaaggcacttgcaatcatccaatataagag 28525034  T
Q  702 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 801  Q
       ||||||| ||| | ||||||||||||||||||||||| ||||||||| | | |||||||| |||   || |||||||| | ||||||||| ||| ||    
T  28525033 catataaaaactgaaaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaatattttcacattagcagaccacatgacaagtat 28524934  T
Q  802 tgcaagaaattcttatgacaagctgcatt 830  Q
    || |||||| || | ||||||| ||||||    
T  28524933 tggaagaaaatcatctgacaagttgcatt 28524905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 602 - 764
Target Start/End: Complemental strand, 28191300 - 28191138
Alignment:
Q  602 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 701  Q
    |||||||||||||||||||||  |  ||||||||| | | |||||||| |||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  28191300 gaggaagtcaatgatttgcagtttgctgcagacaagtttgttaaatttagtggaatccctctaatttctctaaggcacttgcaatcatccaatataagat 28191201  T
Q  702 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggt 764  Q
     | |||||| |||||| ||||||||||||||||||||||| ||||||||| | | ||||||||    
T  28191200 ccgataaaaggtgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggt 28191138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1001 - 1091
Target Start/End: Complemental strand, 28178327 - 28178237
Alignment:
Q  1001 ccagtgagatttcgaaatgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt 1091  Q
    ||||||| ||||  ||||||||||  |||||||||||| ||||||||||||| ||||| |||||| ||||||||||| |||||||| ||||    
T  28178327 ccagtgatatttttaaatgaaaatcacaactcttctatggaagttcccaccagaacaactgatgatatattttccatgtctcctaacattt 28178237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 576 - 646
Target Start/End: Original strand, 28192456 - 28192525
Alignment:
Q  576 cttatttagtagcattctcctgcaaagaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaa 646  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||   ||||||||||||||||||||||    
T  28192456 cttatttagtagcatgctcctgcaa-gaggaagtcaatgatttgcaatttaatgcagacaaatgttttaaa 28192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1017 - 1091
Target Start/End: Complemental strand, 28224373 - 28224299
Alignment:
Q  1017 atgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt 1091  Q
    ||||||||| |||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||| ||||    
T  28224373 atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt 28224299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 626 - 785
Target Start/End: Complemental strand, 28142511 - 28142352
Alignment:
Q  626 aatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccataaaaagtgacagtctttga 725  Q
    |||||||||| ||||||||||||||| |||| ||| ||||||||| ||||| | || || | |||||| | ||| | |  ||||||||  || |||||||    
T  28142511 aatgcagacacatgttttaaatttggcggaatccccctaatttcttgaagagacttacaattatccaattcaaggctctgtaaaaagttgcattctttga 28142412  T
Q  726 tgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaa 785  Q
     |||||| ||||| || || |||||||||| |||||||  ||||| || |||||||||||    
T  28142411 ggcattccggaaggattgtaaaattactccctgataggactaaatctttcacattagtaa 28142352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 28179555 - 28179496
Alignment:
Q  97 aggatcagtgaattgaatatccgccatgctacttttctgctttgatacatggattccaaa 156  Q
    |||||| |||||||||||||||| ||||||||||| | ||||| ||||||||||||||||    
T  28179555 aggatcggtgaattgaatatccgtcatgctactttacggctttaatacatggattccaaa 28179496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1003 - 1091
Target Start/End: Complemental strand, 29828530 - 29828442
Alignment:
Q  1003 agtgagatttcgaaatgaaaatggcaactcttctattgaagttcccac-caaaacaagtgatgagatattttccatctctcctaatattt 1091  Q
    |||||||||| |||||||||||||||| |||| ||| ||||||||||| ||||||| || | |  ||||| ||||||| |||||||||||    
T  29828530 agtgagattttgaaatgaaaatggcaattcttttatggaagttcccacacaaaacatgtca-gttatattctccatctttcctaatattt 29828442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 719 - 790
Target Start/End: Original strand, 28095794 - 28095865
Alignment:
Q  719 tctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccac 790  Q
    |||||||||||||| |||||||| |||| ||||||  |||||| |||||||| |  |||||||| |||||||    
T  28095794 tctttgatgcattccggaagaattgtgatattactttttgataagtttaaatttgtcacattagcaaaccac 28095865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 28143105 - 28143032
Alignment:
Q  97 aggatcagtgaattgaatatccgccatgctacttttctgctttgatacatggattccaaaatctgtaaagagtg 170  Q
    ||||||||||||| |||||||   |||||| |||||||||||  ||||||| |||||| ||| ||||| |||||    
T  28143105 aggatcagtgaatcgaatatcattcatgctgcttttctgcttgaatacatgaattccacaatttgtaaggagtg 28143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 93; Significance: 1e-44; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 602 - 830
Target Start/End: Complemental strand, 46417 - 46189
Alignment:
Q  602 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 701  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  46417 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcacttgcaatcatccaacctaagag 46318  T
Q  702 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 801  Q
     |||||||||| |||| ||||||||||||||||||||||| ||||||||  |   ||||||||||||| |||| ||||| | | ||||||||| ||  ||    
T  46317 accataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactat 46218  T
Q  802 tgcaagaaattcttatgacaagctgcatt 830  Q
    || ||||||||| | ||||||| ||||||    
T  46217 tggaagaaattcatctgacaagttgcatt 46189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 602 - 828
Target Start/End: Complemental strand, 39436 - 39210
Alignment:
Q  602 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 701  Q
    |||||| ||||||||||||||  |  ||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||   |||      
T  39436 gaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcatttgcaatcatccaatataagat 39337  T
Q  702 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 801  Q
     |  ||||||| |||| ||||||||||||||||||||||| ||||||||| | | |||||||| ||| | |  |||||||| | ||||||||| ||  ||    
T  39336 ccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattat 39237  T
Q  802 tgcaagaaattcttatgacaagctgca 828  Q
    || ||||||||| | ||||||| ||||    
T  39236 tggaagaaattcatctgacaagatgca 39210  T

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Target: scaffold0038; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1017 - 1091
Target Start/End: Complemental strand, 24871 - 24797
Alignment:
Q  1017 atgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt 1091  Q
    ||||||||| |||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||| ||||    
T  24871 atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt 24797  T

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Target: scaffold0019 (Bit Score: 87; Significance: 4e-41; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 602 - 812
Target Start/End: Original strand, 55513 - 55723
Alignment:
Q  602 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 701  Q
    |||||||||||||||||||||| || ||||||||| ||||||| ||||||||||| |||||||||||||||||| || ||||| |||||||| | |||      
T  55513 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttacatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatttaagaa 55612  T
Q  702 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 801  Q
     ||| |||||| |||| ||||| |||||||| |||||||| ||||||||| | | |||||||| ||||  || |||||||| | ||||||||| ||| ||    
T  55613 accacaaaaagcgacaatctttcatgcattccggaagaattgtgaaattatttcctgataggtctaaagttttcacattagcagaccacatgacaagtat 55712  T
Q  802 tgcaagaaatt 812  Q
    || ||||||||    
T  55713 tggaagaaatt 55723  T

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Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 626 - 770
Target Start/End: Complemental strand, 16694036 - 16693892
Alignment:
Q  626 aatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccat-aaaaagtgacagtctttg 724  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| |||| ||||| ||| ||  || |||||||| || ||||||    
T  16694036 aatgcagacaaacgttttaaatttggaggaatccctctaatttctcgaagacatgtgcagtcattcaaattaag-cgtaatcaaaaagtggcattctttg 16693938  T
Q  725 atgcattctggaagaatagtgaaattactccttgataggtttaaat 770  Q
    ||  |||||||||| || |||||| || |||| ||||||| |||||    
T  16693937 ataaattctggaagtattgtgaaactattcctcgataggtctaaat 16693892  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 619 - 750
Target Start/End: Original strand, 5088325 - 5088456
Alignment:
Q  619 gcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccataaaaagtgacag 718  Q
    ||||| |||||||||||  |  |||| | |||| |||| ||||||||||||| ||||| | ||||| |||| ||| ||||| | ||||| |||| ||||     
T  5088325 gcagcgtaatgcagacatgttctttagagttggaggaatccctctaatttcttgaagagacttgcattcattcaattgaaggctccatagaaagcgacat 5088424  T
Q  719 tctttgatgcattctggaagaatagtgaaatt 750  Q
    ||||||| |||||||||||||||  |||||||    
T  5088425 tctttgaggcattctggaagaattttgaaatt 5088456  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 719 - 790
Target Start/End: Complemental strand, 3282493 - 3282422
Alignment:
Q  719 tctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccac 790  Q
    |||| |||||||||||||||||| ||||||||| || |||||| || |||||||  ||||||||||||||||    
T  3282493 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccac 3282422  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 707 - 782
Target Start/End: Original strand, 16352164 - 16352239
Alignment:
Q  707 aaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattag 782  Q
    |||||||||||||||||||| ||| |  ||||| | ||||||||| || | ||||||||||||| || ||||||||    
T  16352164 aaaaagtgacagtctttgatccatgcatgaagagttgtgaaattattcttcgataggtttaaatctttcacattag 16352239  T

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