View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1018_low_2 (Length: 1112)

Name: NF1018_low_2
Description: NF1018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1018_low_2
NF1018_low_2
[»] chr6 (16 HSPs)
chr6 (95-617)||(28154464-28154988)
chr6 (830-1112)||(28154185-28154467)
chr6 (600-828)||(28246027-28246255)
chr6 (600-828)||(28328269-28328497)
chr6 (600-828)||(28505905-28506133)
chr6 (600-826)||(28239048-28239274)
chr6 (600-828)||(28524905-28525133)
chr6 (600-762)||(28191138-28191300)
chr6 (999-1089)||(28178237-28178327)
chr6 (574-644)||(28192456-28192525)
chr6 (1015-1089)||(28224299-28224373)
chr6 (624-783)||(28142352-28142511)
chr6 (95-154)||(28179496-28179555)
chr6 (1001-1089)||(29828442-29828530)
chr6 (717-788)||(28095794-28095865)
chr6 (95-168)||(28143032-28143105)
[»] scaffold0038 (3 HSPs)
scaffold0038 (600-828)||(46189-46417)
scaffold0038 (600-826)||(39210-39436)
scaffold0038 (1015-1089)||(24797-24871)
[»] scaffold0019 (1 HSPs)
scaffold0019 (600-810)||(55513-55723)
[»] chr5 (1 HSPs)
chr5 (624-768)||(16693892-16694036)
[»] chr4 (1 HSPs)
chr4 (617-748)||(5088325-5088456)
[»] chr2 (1 HSPs)
chr2 (717-788)||(3282422-3282493)
[»] chr8 (1 HSPs)
chr8 (705-780)||(16352164-16352239)


Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 95 - 617
Target Start/End: Complemental strand, 28154988 - 28154464
Alignment:
Q  95 aggatcagtgaattgaatatccgccatgctacttttctgctttgatacatggattccaaaatctgtaaagagtgttgttatcatctaagacctgcatgta 194  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||    
T  28154988 aggatcggtgaattgaatatccgccatgctacttttctgctttaatacatggattccaaaatctgtaacgagtgttgtcatcatcaaagacctgcatgta 28154889  T
Q  195 atctctacatggatccattcatttttcagaagtgcattgtgcagtatagaattgaaccgcatatcctctagttgaagatcgtatagatatgtattattcg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  28154888 atctctacatggatccattcatttttcagaagtgcattgtgcagtatagaattgaaccgcatatcctccagttgaagatcgtatagatacgtattattcg 28154789  T
Q  295 gttc--------------taccatgtccaagaccactttgacagtcatagtctttgatgaacagattgggtcttaatgaatgaaattcactgagggagta 380  Q
    ||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154788 gttctaccccgatattactaccatgtccaagaccactttgacagtcatagtctttgatgaacagattgggtcttaatgaatgaaattcactgagggagta 28154689  T
Q  381 ccagaattaaattcattgtcccgtgctttggtgctcaaaccactccagaatccttgcagatcctgccatacgaatgttcgtatttccagatatatgcagc 480  Q
    |||||||||||| ||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154688 ccagaattaaataca------------ttggtgctcaaaccactccagaatccttgcagatcctgccatacgaatgttcgtatttccagatatatgcagc 28154601  T
Q  481 tcctgttagtcataaataatttataagattaccaacataaattacaatatgctatgaaatgtaaaatgaaatttttaagcaagnnnnnnnnnncttattt 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |          |||||||    
T  28154600 tcctgttagtcataaataatttataagattaccaacataaattacaatatgctatgaaatgtaaaatgaaatttttaagcatgaaaataaaaacttattt 28154501  T
Q  581 agtagcattctcctgcaaagaggaagtcaatgatttg 617  Q
    |||||||||||||||||||||||||||||||||||||    
T  28154500 agtagcattctcctgcaaagaggaagtcaatgatttg 28154464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 830 - 1112
Target Start/End: Complemental strand, 28154467 - 28154185
Alignment:
Q  830 tttgagcagaagttgtcgtacatttgtagacaggatggaattcagcttaacattttggtttggcaataatagaccgccctcaatagtaatccatgacaat 929  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154467 tttgagccgaagttgtcgtacatttgtagtcaggatggaattcagcttaacattttggtttggcaataatagaccgccctcaatagtaatccatgacaat 28154368  T
Q  930 tttggcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaact 1029  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154367 tttggcatcatgataatactactagacaaccaaaggattccacgtgcctctacttgtaaactatgaagaccagtgagatttcgaaatgaaaatggcaact 28154268  T
Q  1030 cttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatatttgagactagaacaacatgagagat 1112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28154267 cttctattgaagttcccaccaaaacaagtgataagatattttccatctctcctaatatttgagactagaacaacatgagagat 28154185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 600 - 828
Target Start/End: Complemental strand, 28246255 - 28246027
Alignment:
Q  600 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 699  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  28246255 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcacttgcaatcatccaacctaagag 28246156  T
Q  700 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 799  Q
     |||||||||| |||| ||||||||||||||||||||||| ||||||||  |   ||||||||||||| |||| ||||| | | ||||||||| ||  ||    
T  28246155 accataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactat 28246056  T
Q  800 tgcaagaaattcttatgacaagctgcatt 828  Q
    || ||||||||| | ||||||| ||||||    
T  28246055 tggaagaaattcatctgacaagttgcatt 28246027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 600 - 828
Target Start/End: Complemental strand, 28328497 - 28328269
Alignment:
Q  600 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 699  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||| ||||||||   ||||     
T  28328497 gaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatgtaagct 28328398  T
Q  700 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 799  Q
     | | |||||| |||| ||||||||||||||||||||||| |||||| || | | |||||||| |||   ||||||||||| | ||||||||| ||| ||    
T  28328397 tcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttccacattagcagaccacatgacaagtat 28328298  T
Q  800 tgcaagaaattcttatgacaagctgcatt 828  Q
    || ||||||||| | ||||||| ||||||    
T  28328297 tggaagaaattcatctgacaagttgcatt 28328269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 600 - 828
Target Start/End: Complemental strand, 28506133 - 28505905
Alignment:
Q  600 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 699  Q
    |||||||||||||||||||||| |  ||||||||||| ||||||||||||||||| |||||||||||||||||| || ||||| ||||||||   ||||     
T  28506133 gaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatgtaagct 28506034  T
Q  700 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 799  Q
     | | |||||| |||| ||||||||||||||||||||||| |||||| || | | |||||||| |||   ||||||||||| | ||||||||| ||| ||    
T  28506033 tcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttccacattagcagaccacatgacaagtat 28505934  T
Q  800 tgcaagaaattcttatgacaagctgcatt 828  Q
    || ||||||||| | ||||||| ||||||    
T  28505933 tggaagaaattcatctgacaagttgcatt 28505905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 600 - 826
Target Start/End: Complemental strand, 28239274 - 28239048
Alignment:
Q  600 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 699  Q
    |||||| ||||||||||||||  |  ||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||   |||      
T  28239274 gaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcatttgcaatcatccaatataagat 28239175  T
Q  700 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 799  Q
     |  ||||||| |||| ||||||||||||||||||||||| ||||||||| | | |||||||| ||| | |  |||||||| | ||||||||| ||  ||    
T  28239174 ccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattat 28239075  T
Q  800 tgcaagaaattcttatgacaagctgca 826  Q
    || ||||||||| | ||||||| ||||    
T  28239074 tggaagaaattcatctgacaagatgca 28239048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 600 - 828
Target Start/End: Complemental strand, 28525133 - 28524905
Alignment:
Q  600 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 699  Q
    ||||||||||| ||||||||||||| ||||||||| | |  ||||||||| || | |||||||||||||| ||| || ||||| ||||||||   |||      
T  28525133 gaggaagtcaaggatttgcagcctattgcagacaagtatgctaaatttggcggcatccctctaatttctctaaggcacttgcaatcatccaatataagag 28525034  T
Q  700 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 799  Q
       ||||||| ||| | ||||||||||||||||||||||| ||||||||| | | |||||||| |||   || |||||||| | ||||||||| ||| ||    
T  28525033 catataaaaactgaaaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaatattttcacattagcagaccacatgacaagtat 28524934  T
Q  800 tgcaagaaattcttatgacaagctgcatt 828  Q
    || |||||| || | ||||||| ||||||    
T  28524933 tggaagaaaatcatctgacaagttgcatt 28524905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 600 - 762
Target Start/End: Complemental strand, 28191300 - 28191138
Alignment:
Q  600 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 699  Q
    |||||||||||||||||||||  |  ||||||||| | | |||||||| |||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  28191300 gaggaagtcaatgatttgcagtttgctgcagacaagtttgttaaatttagtggaatccctctaatttctctaaggcacttgcaatcatccaatataagat 28191201  T
Q  700 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggt 762  Q
     | |||||| |||||| ||||||||||||||||||||||| ||||||||| | | ||||||||    
T  28191200 ccgataaaaggtgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggt 28191138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 999 - 1089
Target Start/End: Complemental strand, 28178327 - 28178237
Alignment:
Q  999 ccagtgagatttcgaaatgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt 1089  Q
    ||||||| ||||  ||||||||||  |||||||||||| ||||||||||||| ||||| |||||| ||||||||||| |||||||| ||||    
T  28178327 ccagtgatatttttaaatgaaaatcacaactcttctatggaagttcccaccagaacaactgatgatatattttccatgtctcctaacattt 28178237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 574 - 644
Target Start/End: Original strand, 28192456 - 28192525
Alignment:
Q  574 cttatttagtagcattctcctgcaaagaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaa 644  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||   ||||||||||||||||||||||    
T  28192456 cttatttagtagcatgctcctgcaa-gaggaagtcaatgatttgcaatttaatgcagacaaatgttttaaa 28192525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1015 - 1089
Target Start/End: Complemental strand, 28224373 - 28224299
Alignment:
Q  1015 atgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt 1089  Q
    ||||||||| |||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||| ||||    
T  28224373 atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt 28224299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 624 - 783
Target Start/End: Complemental strand, 28142511 - 28142352
Alignment:
Q  624 aatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccataaaaagtgacagtctttga 723  Q
    |||||||||| ||||||||||||||| |||| ||| ||||||||| ||||| | || || | |||||| | ||| | |  ||||||||  || |||||||    
T  28142511 aatgcagacacatgttttaaatttggcggaatccccctaatttcttgaagagacttacaattatccaattcaaggctctgtaaaaagttgcattctttga 28142412  T
Q  724 tgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaa 783  Q
     |||||| ||||| || || |||||||||| |||||||  ||||| || |||||||||||    
T  28142411 ggcattccggaaggattgtaaaattactccctgataggactaaatctttcacattagtaa 28142352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 28179555 - 28179496
Alignment:
Q  95 aggatcagtgaattgaatatccgccatgctacttttctgctttgatacatggattccaaa 154  Q
    |||||| |||||||||||||||| ||||||||||| | ||||| ||||||||||||||||    
T  28179555 aggatcggtgaattgaatatccgtcatgctactttacggctttaatacatggattccaaa 28179496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1001 - 1089
Target Start/End: Complemental strand, 29828530 - 29828442
Alignment:
Q  1001 agtgagatttcgaaatgaaaatggcaactcttctattgaagttcccac-caaaacaagtgatgagatattttccatctctcctaatattt 1089  Q
    |||||||||| |||||||||||||||| |||| ||| ||||||||||| ||||||| || | |  ||||| ||||||| |||||||||||    
T  29828530 agtgagattttgaaatgaaaatggcaattcttttatggaagttcccacacaaaacatgtca-gttatattctccatctttcctaatattt 29828442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 717 - 788
Target Start/End: Original strand, 28095794 - 28095865
Alignment:
Q  717 tctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccac 788  Q
    |||||||||||||| |||||||| |||| ||||||  |||||| |||||||| |  |||||||| |||||||    
T  28095794 tctttgatgcattccggaagaattgtgatattactttttgataagtttaaatttgtcacattagcaaaccac 28095865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 28143105 - 28143032
Alignment:
Q  95 aggatcagtgaattgaatatccgccatgctacttttctgctttgatacatggattccaaaatctgtaaagagtg 168  Q
    ||||||||||||| |||||||   |||||| |||||||||||  ||||||| |||||| ||| ||||| |||||    
T  28143105 aggatcagtgaatcgaatatcattcatgctgcttttctgcttgaatacatgaattccacaatttgtaaggagtg 28143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 93; Significance: 1e-44; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 600 - 828
Target Start/End: Complemental strand, 46417 - 46189
Alignment:
Q  600 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 699  Q
    |||||||||||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||| || ||||| ||||||||   |||      
T  46417 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcacttgcaatcatccaacctaagag 46318  T
Q  700 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 799  Q
     |||||||||| |||| ||||||||||||||||||||||| ||||||||  |   ||||||||||||| |||| ||||| | | ||||||||| ||  ||    
T  46317 accataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattctacattcgcagaccacatgacaactat 46218  T
Q  800 tgcaagaaattcttatgacaagctgcatt 828  Q
    || ||||||||| | ||||||| ||||||    
T  46217 tggaagaaattcatctgacaagttgcatt 46189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 600 - 826
Target Start/End: Complemental strand, 39436 - 39210
Alignment:
Q  600 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 699  Q
    |||||| ||||||||||||||  |  ||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||| ||||||||   |||      
T  39436 gaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaaggcatttgcaatcatccaatataagat 39337  T
Q  700 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 799  Q
     |  ||||||| |||| ||||||||||||||||||||||| ||||||||| | | |||||||| ||| | |  |||||||| | ||||||||| ||  ||    
T  39336 ccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgacacattagcagaccacatgacaattat 39237  T
Q  800 tgcaagaaattcttatgacaagctgca 826  Q
    || ||||||||| | ||||||| ||||    
T  39236 tggaagaaattcatctgacaagatgca 39210  T

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Target: scaffold0038; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1015 - 1089
Target Start/End: Complemental strand, 24871 - 24797
Alignment:
Q  1015 atgaaaatggcaactcttctattgaagttcccaccaaaacaagtgatgagatattttccatctctcctaatattt 1089  Q
    ||||||||| |||||||||||| ||||||||||||| || || |||||| |||||||||||||||||||| ||||    
T  24871 atgaaaatgacaactcttctatggaagttcccaccagaaaaactgatgatatattttccatctctcctaacattt 24797  T

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Target: scaffold0019 (Bit Score: 87; Significance: 4e-41; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 600 - 810
Target Start/End: Original strand, 55513 - 55723
Alignment:
Q  600 gaggaagtcaatgatttgcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagcc 699  Q
    |||||||||||||||||||||| || ||||||||| ||||||| ||||||||||| |||||||||||||||||| || ||||| |||||||| | |||      
T  55513 gaggaagtcaatgatttgcagcgtattgcagacaagtgttttacatttggtggaatccctctaatttctcgaaggcacttgcaatcatccaatttaagaa 55612  T
Q  700 gccataaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccacatgagaagcat 799  Q
     ||| |||||| |||| ||||| |||||||| |||||||| ||||||||| | | |||||||| ||||  || |||||||| | ||||||||| ||| ||    
T  55613 accacaaaaagcgacaatctttcatgcattccggaagaattgtgaaattatttcctgataggtctaaagttttcacattagcagaccacatgacaagtat 55712  T
Q  800 tgcaagaaatt 810  Q
    || ||||||||    
T  55713 tggaagaaatt 55723  T

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Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 624 - 768
Target Start/End: Complemental strand, 16694036 - 16693892
Alignment:
Q  624 aatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccat-aaaaagtgacagtctttg 722  Q
    |||||||||||| ||||||||||||| |||| |||||||||||||||||||||| |||| |||| ||||| ||| ||  || |||||||| || ||||||    
T  16694036 aatgcagacaaacgttttaaatttggaggaatccctctaatttctcgaagacatgtgcagtcattcaaattaag-cgtaatcaaaaagtggcattctttg 16693938  T
Q  723 atgcattctggaagaatagtgaaattactccttgataggtttaaat 768  Q
    ||  |||||||||| || |||||| || |||| ||||||| |||||    
T  16693937 ataaattctggaagtattgtgaaactattcctcgataggtctaaat 16693892  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 617 - 748
Target Start/End: Original strand, 5088325 - 5088456
Alignment:
Q  617 gcagcctaatgcagacaaatgttttaaatttggtggaacccctctaatttctcgaagacatttgcactcatccaaatgaagccgccataaaaagtgacag 716  Q
    ||||| |||||||||||  |  |||| | |||| |||| ||||||||||||| ||||| | ||||| |||| ||| ||||| | ||||| |||| ||||     
T  5088325 gcagcgtaatgcagacatgttctttagagttggaggaatccctctaatttcttgaagagacttgcattcattcaattgaaggctccatagaaagcgacat 5088424  T
Q  717 tctttgatgcattctggaagaatagtgaaatt 748  Q
    ||||||| |||||||||||||||  |||||||    
T  5088425 tctttgaggcattctggaagaattttgaaatt 5088456  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 717 - 788
Target Start/End: Complemental strand, 3282493 - 3282422
Alignment:
Q  717 tctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattagtaaaccac 788  Q
    |||| |||||||||||||||||| ||||||||| || |||||| || |||||||  ||||||||||||||||    
T  3282493 tcttcgatgcattctggaagaattgtgaaattattctttgataagtgtaaatatgtcacattagtaaaccac 3282422  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 705 - 780
Target Start/End: Original strand, 16352164 - 16352239
Alignment:
Q  705 aaaaagtgacagtctttgatgcattctggaagaatagtgaaattactccttgataggtttaaatattccacattag 780  Q
    |||||||||||||||||||| ||| |  ||||| | ||||||||| || | ||||||||||||| || ||||||||    
T  16352164 aaaaagtgacagtctttgatccatgcatgaagagttgtgaaattattcttcgataggtttaaatctttcacattag 16352239  T

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