View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1018_low_8 (Length: 251)

Name: NF1018_low_8
Description: NF1018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1018_low_8
NF1018_low_8
[»] chr1 (4 HSPs)
chr1 (8-251)||(37865706-37865965)
chr1 (23-145)||(37909011-37909133)
chr1 (6-145)||(37879747-37879887)
chr1 (15-105)||(37916240-37916331)
[»] scaffold0187 (4 HSPs)
scaffold0187 (23-160)||(8706-8843)
scaffold0187 (23-160)||(19034-19171)
scaffold0187 (24-161)||(1511-1653)
scaffold0187 (23-145)||(29944-30066)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 37865965 - 37865706
Alignment:
Q  8 caccacagatataaagtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37865965 caccacagatataaagtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaa 37865866  T
Q  108 gactatatataccaataatctttctgattttatgtatgatcgatgatccatcattca----------------ctatttcttctgttacaagtcacaaaa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||    
T  37865865 gactatatataccaataatctttctgattttatgtatgatcgatgatccatcattcactataattgtcatttactatttcttctgttacaagtcacaaaa 37865766  T
Q  192 ttatacgtacagtcattaatagttaatacaatatgattgtcagtcccacatagatgagat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37865765 ttatacgtacagtcattaatagttaatacaatatgattgtcagtcccacatagatgagat 37865706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 37909133 - 37909011
Alignment:
Q  23 gtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa 122  Q
    |||||||| ||||  ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||      
T  37909133 gtataaaggtgggactaatgcagaatgtttaagctaaggctacactattttatttctcactcatccaataatgttccttgtaaaagactatatataccgg 37909034  T
Q  123 taatctttctgattttatgtatg 145  Q
    ||||||||||||||||| |||||    
T  37909033 taatctttctgattttacgtatg 37909011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 37879887 - 37879747
Alignment:
Q  6 agcaccacagatataaag-tataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgta 104  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||| |||| |||  ||||||||||||    
T  37879887 agcaccacagatataaaggtataaaggtgggtttaatgcagaatgtttaagctaatgctactctattttatttctcattcattcaagtatgttctttgta 37879788  T
Q  105 aaagactatatataccaataatctttctgattttatgtatg 145  Q
    |||||||| ||||||    ||||||| ||| ||||||||||    
T  37879787 aaagactacatatacttgcaatctttttgagtttatgtatg 37879747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 37916331 - 37916240
Alignment:
Q  15 gatataaag-tataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaa 105  Q
    ||||||||| ||||||| ||||||||||||||||||| || |||||||||||||||||||| |||||| |||| |||| ||||||| |||||    
T  37916331 gatataaaggtataaaggtgggtttaatgcagaatgtttaggctaaggctactctattttatttctcattcattcaattatgttctatgtaa 37916240  T

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Target: scaffold0187 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 8706 - 8843
Alignment:
Q  23 gtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa 122  Q
    |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8706 gtataaaggtgggtctaatgcagaatgtttaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa 8805  T
Q  123 taatctttctgattttatgtatgatcgatgatccatca 160  Q
    ||||||||||||||||||||||  || |||||||||||    
T  8806 taatctttctgattttatgtattttccatgatccatca 8843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 23 - 160
Target Start/End: Original strand, 19034 - 19171
Alignment:
Q  23 gtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa 122  Q
    |||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19034 gtataaaggtgggtctaatgcagaatgtttaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa 19133  T
Q  123 taatctttctgattttatgtatgatcgatgatccatca 160  Q
    ||||||||||||||||||||||  || |||||||||||    
T  19134 taatctttctgattttatgtattttccatgatccatca 19171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 1511 - 1653
Alignment:
Q  24 tataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagac-----tatatata 118  Q
    ||||||| ||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     ||||||||    
T  1511 tataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaagactatattatatata 1610  T
Q  119 ccaataatctttctgattttatgtatgatcgatgatccatcat 161  Q
    ||| |||||||||||||||||| ||| ||||||||||||||||    
T  1611 ccagtaatctttctgattttatatattatcgatgatccatcat 1653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 29944 - 30066
Alignment:
Q  23 gtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaaagactatatataccaa 122  Q
    |||||||| ||||  ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||      
T  29944 gtataaaggtgggactaatgcagaatgtttaagctaaggctacactattttatttctcactcatccaataatgttccttgtaaaagactatatataccgg 30043  T
Q  123 taatctttctgattttatgtatg 145  Q
    ||||||||||||||||| |||||    
T  30044 taatctttctgattttacgtatg 30066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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