View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1018_low_9 (Length: 222)
Name: NF1018_low_9
Description: NF1018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1018_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 8711489 - 8711651
Alignment:
| Q |
1 |
gaaattgacaaagatatattcttctttttgtgggaaaaggtggagcaaataattgatatagtgggcgaaggatgaaacctggggatcaagaataaggtat |
100 |
Q |
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| T |
8711489 |
gaaattgacaaagatatattcttctttttgtgggaaaaggtggagcaaataattgatatagtgggcgaaggatgaaacctggggatcaagaataagttat |
8711588 |
T |
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| Q |
101 |
catagtgagaagtgtctttggaatcaagagcaagaatagaatactccctcatcctataagagt |
163 |
Q |
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| T |
8711589 |
catagtgagaagtgtctttggaatcaagagcaagaatagaatactccctcatcctataggagt |
8711651 |
T |
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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8735900 - 8735972
Alignment:
| Q |
1 |
gaaattgacaaagatatattcttctttttgtgggaaaaggtggagcaaataattgatatagtgggcgaaggat |
73 |
Q |
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| T |
8735900 |
gaaattgacaaagttttattgtgctttttgtgggaaaaagtggagcaaataattgacatggtggcccaaggat |
8735972 |
T |
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