View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_high_4 (Length: 412)
Name: NF10190_high_4
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 5638022 - 5637641
Alignment:
| Q |
18 |
catataaactcgcaaaatgtcataataccacgcaatgtggaacttcttacttttgaatatcacgaaaacacaacagtacatactaagaatcctaaatcct |
117 |
Q |
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| T |
5638022 |
catataaactcgcaaaatgtcataataccacgcaatgtggaacttcttacttttgaatatcacgaaaacacaacagtacatactaagaatcctaaatcct |
5637923 |
T |
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| Q |
118 |
ttactccagagatactgcgagtgaaaaccnnnnnnntacgaagaatctcgattaaaaagctggattcggacatgagtagcagaagataaacttttgttac |
217 |
Q |
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| T |
5637922 |
ttactccagagatactgcgagtgaaaaccaaaaacatacgaagaatctcgataaaaaagcaggattcggacatgagtagcagaagataaacttttgttac |
5637823 |
T |
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| Q |
218 |
atataccaccatgtctgaggggatcataataatcaaaatgttacatgttgagattcaataatgtaagaaagaaaatacttataagcaaagaagataaaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5637822 |
gtataccaccatgtctgaggggatcataataatcaaaatgttacatgttgagattcaataatgtaagaaagaaaatacttataagcaaagaagataaaac |
5637723 |
T |
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| Q |
318 |
cacactgattatagtttagaacattcaggacatggaaaataacctttggcttgacatttatcacaagctatcttcttcacct |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5637722 |
cacactgattatagtttagaacattcaggacatggaaaataacctttggcttgacatttatcacaagctatcttcttcacct |
5637641 |
T |
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