View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_high_5 (Length: 407)
Name: NF10190_high_5
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 34725556 - 34725932
Alignment:
| Q |
17 |
ataagaaaatgttgaatagttgataacaatatcagtggtctagatcctctgcgctgtgttactctgctatttttgaaataatgcttggattttgctgttg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34725556 |
ataagaaaatgttgaatagttgataacaatatcagtggtctagatcctctgcgctgtgttactctgctatttttgaaataatgcttggattttgctgttg |
34725655 |
T |
|
| Q |
117 |
ctacgtgtactatgcttattgtaaatagtgtctgctgtttgtggtatactgaatgttcagttgaagtaccttgtggaataagtaaatgactaatccatag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34725656 |
ctacgtgtactatgcttattgtaaatagtgtctgctgtttgtggtatactgaatgttcagctgaagtaccttgtggaataagtaaatgactaatccatag |
34725755 |
T |
|
| Q |
217 |
ttattgcatttgttggcctcctagctcctctatgctatgctactttgcttagcttatcattgtattttttatgtagtgcgtggatagtgtttctatctgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34725756 |
ttattgcatttgttggcctcctagctcctctatgctatgctactttgcttagcttatcattgtattttttatgtagtgcgtggatagtgtttctatctgt |
34725855 |
T |
|
| Q |
317 |
gcctgtagcaaaatagtgatggacccttgttcaataatgcatctttgtcatggaagctggtctatagttttaatctt |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34725856 |
gcctgtagcaaaatagtgatggacccttgttcaataatgcatctttgtcatggaagctggtctatagttttaatctt |
34725932 |
T |
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