View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10190_high_6 (Length: 349)

Name: NF10190_high_6
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10190_high_6
NF10190_high_6
[»] chr2 (3 HSPs)
chr2 (12-329)||(30946464-30946781)
chr2 (131-319)||(30952530-30952718)
chr2 (17-132)||(30952374-30952489)
[»] chr4 (1 HSPs)
chr4 (17-101)||(13208354-13208438)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 30946464 - 30946781
Alignment:
Q  12 tcatcagtaataagactattttcttctaattcatggagttgcagcattctgcgactcccaattatttgcaagtccatgttaagtttctttcaagccaaca 111  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946464 tcataagtaataagactattttcttctaattcatggagttgcagcattttgcgactcccaattatttgcaagtccatgttaagtttctttcaagccaaca 30946563  T
Q  112 aggctttttgttgtaattcagatattgcaagtggtgttttgtatgcagccttatgtgcccatagatcatcatataattgaagagaccaatctttccttga 211  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946564 agggtttttgttgtaattcagatattccaagtggtgttttgtatgcagccttatgtgcccatagatcatcatataattgaagagaccaatctttccttga 30946663  T
Q  212 agggtttattactttttccaaaattcttttaatctctctatttgatagcactctattcaacacagcttcgaacatttagctacaaaagtcagttcaccca 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30946664 agggtttattactttttccaaaattcttttaatctctctatttgatagcactctattcaacacagcttcgaacatttagctacaaaagtcagttcaccca 30946763  T
Q  312 ttactaatgatagttata 329  Q
    ||||||||||||||||||    
T  30946764 ttactaatgatagttata 30946781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 131 - 319
Target Start/End: Original strand, 30952530 - 30952718
Alignment:
Q  131 agatattgcaagtggtgttttgtatgcagccttatgtgcccatagatcatcatataattgaagagaccaatctttccttgaagggtttattactttttcc 230  Q
    ||||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30952530 agatattccaagtggtgttttgtatgcagccctatatgcccatagagcatcatataattgaagagaccaatctttccctgaagggtttattactttttcc 30952629  T
Q  231 aaaattcttttaatctctctatttgatagcactctattcaacacagcttcgaacatttagctacaaaagtcagttcacccattactaat 319  Q
    |||||| ||| ||||||||||||||||||| |||||||||||||| |||| ||||||| ||| ||||||| ||||| ||||||||||||    
T  30952630 aaaattgtttcaatctctctatttgatagctctctattcaacacaacttcaaacattttgctgcaaaagtgagttcccccattactaat 30952718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 30952374 - 30952489
Alignment:
Q  17 agtaataagactattttcttctaattcatggagttgcagcattctgcgactcccaattatttgcaagtccatgttaagtttctttcaagccaacaaggct 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||  | |||||| | |  |||||||||||| |||||||||||||  |||||||||||||    
T  30952374 agtaataagactattttcttctaatttatggagttgcagcatttcgagactcctagtattttgcaagtccaagttaagtttctttagagccaacaaggct 30952473  T
Q  117 ttttgttgtaattcag 132  Q
    || |||||| ||||||    
T  30952474 ttgtgttgtgattcag 30952489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 13208354 - 13208438
Alignment:
Q  17 agtaataagactattttcttctaattcatggagttgcagcattctgcgactcccaattatttgcaagtccatgttaagtttcttt 101  Q
    ||||||||| ||||  |||||||| ||||||||||||| |||||| | |   |||| | ||||||||||||  ||||||||||||    
T  13208354 agtaataagtctatgctcttctaactcatggagttgcatcattctacaagaaccaactttttgcaagtccaatttaagtttcttt 13208438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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