View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_10 (Length: 360)
Name: NF10190_low_10
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_10 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 14766851 - 14767193
Alignment:
| Q |
1 |
aacaaacattagtttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14766851 |
aacaaacattagtttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatcta |
14766950 |
T |
|
| Q |
101 |
actctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14766951 |
actctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctagc |
14767050 |
T |
|
| Q |
201 |
aacaccaggtatagcaccaactcctcctttagctggtccaccatatatagcttttccccaaccaaattcaacatctccgaatccggcacgtgtcacatca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14767051 |
aacaccaggtatagcaccaactcctcctttagctggtccaccatatacagcttttccccaaccaaattcaacatctccgaatccggcacgtgtcacatca |
14767150 |
T |
|
| Q |
301 |
gacacaagataacttctaaccacagtaaaatgtggtctaccct |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
14767151 |
gacacaagataacttctaaccacagtaaaatgtggtcgaccct |
14767193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 5 - 191
Target Start/End: Original strand, 14873062 - 14873248
Alignment:
| Q |
5 |
aacattagtttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactc |
104 |
Q |
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|||||||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| ||| ||||| |
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| T |
14873062 |
aacattagttcaaggtttacaagggagaaattatgaatctaggttttggaccacccatagtaggttggttaattttgttcttaagcacaccatccaactc |
14873161 |
T |
|
| Q |
105 |
tttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatata |
191 |
Q |
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||||| |||| |||||||||||| || ||| ||||||| |||||||||||||||||| ||||||||||||||| || |||||||| |
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| T |
14873162 |
tttaatgaacctctccatggctttagttggcaaacaaactggtataaccaaaccttctattcctttagcatttttaaatggtatata |
14873248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 62 - 311
Target Start/End: Original strand, 14877850 - 14878099
Alignment:
| Q |
62 |
tagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttc |
161 |
Q |
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||||||| ||||| |||||||||||||| |||||||| ||||||||||| ||| |||||||| |||||| ||| ||| ||| ||||||||||||||||| |
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| T |
14877850 |
tagtaggctggttaatgttgttcttaagaacactatccaactctttaaccaacctctccatgacttgagttggcaaaaaaactggtataaccaaaccttt |
14877949 |
T |
|
| Q |
162 |
ctctcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatatagcttttccccaa |
261 |
Q |
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|||||||||| ||||| | || || |||| |||| ||| |||||| | ||||||| | ||||||||||||||||| ||||| | |||||| |||||| |
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| T |
14877950 |
ctctcctttatcatttgtaaatggaatatgaaagacagcttgaccaggaagagcaccatcccctcctttagctggtcctccataaacagctttcccccaa |
14878049 |
T |
|
| Q |
262 |
ccaaattcaacatctccgaatccggcacgtgtcacatcagacacaagata |
311 |
Q |
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||||| |||||||||| ||||| || ||||| ||||||||||| ||||| |
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| T |
14878050 |
ccaaaatcaacatctcgaaatccagctcgtgtaacatcagacactagata |
14878099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 83 - 264
Target Start/End: Original strand, 14786016 - 14786197
Alignment:
| Q |
83 |
tcttaagcacactatctaactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaa |
182 |
Q |
| |
|
|||||||||||||||| | |||||||| ||| |||||||| ||||| ||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14786016 |
tcttaagcacactatccatttctttaacaaacctctccatgacttgatttggaaaataaaatggtataaccaaaccttcctctcctttagcatttttgaa |
14786115 |
T |
|
| Q |
183 |
aggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatatagcttttccccaacca |
264 |
Q |
| |
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|||||||| ||||||||||| |||||| ||| ||||| || ||||| |||||||||| ||||| || | ||| ||||||||| |
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| T |
14786116 |
aggtatatgaaagctagcaagaccaggaatatcaccatctgctcctctagctggtcctccatagatgggtttcccccaacca |
14786197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 100 - 305
Target Start/End: Complemental strand, 14759852 - 14759647
Alignment:
| Q |
100 |
aactctttaacgaacttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctag |
199 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||| || || ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| || |
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| T |
14759852 |
aactctttaaccaacctctccatgacttgagcaggcaagaaaaacggtataaccaaaccttcttctcctttagcatttttgaaaggtatatgaaatacag |
14759753 |
T |
|
| Q |
200 |
caacaccaggtatagcaccaactcctcctttagctggtccaccatatatagcttttccccaaccaaattcaacatctccgaatccggcacgtgtcacatc |
299 |
Q |
| |
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| |||||| |||||| || | ||||||||||| ||| ||||| | |||||| ||||||||||||||||||||||| | ||| |||||||| | ||| |
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| T |
14759752 |
cttgaccaggaatagcaacatcacctcctttagccattcctccatagagagctttcccccaaccaaattcaacatctccaagtccagcacgtgtaatatc |
14759653 |
T |
|
| Q |
300 |
agacac |
305 |
Q |
| |
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|||||| |
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| T |
14759652 |
agacac |
14759647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 14872226 - 14872310
Alignment:
| Q |
14 |
ttaaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatc |
98 |
Q |
| |
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||||||| ||||| |||||||||| || ||||||||| |||||| | ||||||||||| | |||||||||||||||||| |||| |
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| T |
14872226 |
ttaaggtttacaatgaagaaataacgagactaggtttcggaccatccttagtaggttggctaatgttgttcttaagcacattatc |
14872310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 83863 - 84153
Alignment:
| Q |
15 |
taaggtctacaaggaagaaataatgaaactaggttttggaccaccaatagtaggttggttgatgttgttcttaagcacactatctaactctttaacgaac |
114 |
Q |
| |
|
||||| |||||| |||||| |||||| | || |||| | |||| |||||||| ||| |||||||||||||| || |||| ||||||||||| ||| |
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| T |
83863 |
taaggactacaacgaagaattaatgattccagattttctatcacccatagtaggcgagttaatgttgttcttaagaactttatccaactctttaaccaac |
83962 |
T |
|
| Q |
115 |
ttctccatggcttgagctggtaaacaaagtggtataaccaaaccttcctctcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatag |
214 |
Q |
| |
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|||| ||| |||||| ||| ||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| | ||| || |||||| ||| |
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| T |
83963 |
ctctcgatgacttgagttggaaaaaaaactggtataacaaaaccttcctctcctttagcatttttaaaaggtatataaatggtagaaataccaggattag |
84062 |
T |
|
| Q |
215 |
caccaactcctcctttagctggtccaccatatatagcttttccccaaccaaattcaacatctccgaatccggcacgtgtcacatcagacac |
305 |
Q |
| |
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|||| ||||| || ||||| ||| ||||| | |||||| ||||||||||| |||||||||| ||||| |||||||| ||||||||||| |
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|
| T |
84063 |
taccatctcctgctctagctaatcctccataaacagctttcccccaaccaaaatcaacatctctaaatccagcacgtgtaacatcagacac |
84153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 156 - 302
Target Start/End: Original strand, 11999596 - 11999742
Alignment:
| Q |
156 |
accttcctctcctttagcatttttgaaaggtatataaaagctagcaacaccaggtatagcaccaactcctcctttagctggtccaccatatatagctttt |
255 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||| ||||| ||||| ||| || ||||||| ||||||||||||||||||| ||||| | || ||| |
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| T |
11999596 |
accttcctctcctttaacatttttaaaagctatacgaaagcaagcaagaccgggattagcaccgtctcctcctttagctggtcctccatacacaggtttc |
11999695 |
T |
|
| Q |
256 |
ccccaaccaaattcaacatctccgaatccggcacgtgtcacatcaga |
302 |
Q |
| |
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||||||||||| |||||||||| ||||| |||||||| |||||||| |
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|
| T |
11999696 |
ccccaaccaaactcaacatctctaaatccagcacgtgtaacatcaga |
11999742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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