View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_11 (Length: 353)
Name: NF10190_low_11
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 14437836 - 14437503
Alignment:
| Q |
19 |
tgaaatactaactaaacttattgcaaacccttaatgacttttcttacctataacttaaatgtaaaattatttttataaacatccataaatgtatgatcta |
118 |
Q |
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| T |
14437836 |
tgaaatactaactaaacttattgcaaatccttaatgacttttcttacctataacttaaatgtaaaattatttttataaacatccataaatgtatgatcta |
14437737 |
T |
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| Q |
119 |
aaagtctcataagaaggcaaccaaataaggctcctgtatatgacaaacacgtatagaataagaaaa---------attaaatatcattttcggaaaacaa |
209 |
Q |
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| T |
14437736 |
aaagtctcataagaaggcaaccaaataaggctcctgtatatgacaaacacgtatagaataagaaaaattcaatatattaaatatcattttcggaaaacaa |
14437637 |
T |
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| Q |
210 |
acaaataaggctggccaatccatatttataagttagtagtctagaggtactatattttttctgttacccttattttcataactttactttattaatcata |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14437636 |
acaaataaggctggccaatccatatttataagttagcagtctagaagtactatattttttctgttacccttattttcataactttactttattaatcata |
14437537 |
T |
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| Q |
310 |
tcattcaatttctaacatctttcaccgtcctttg |
343 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
14437536 |
tcattcaatttctaacatctttcaccgtcctttg |
14437503 |
T |
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