View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_13 (Length: 340)
Name: NF10190_low_13
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 60 - 322
Target Start/End: Complemental strand, 32124487 - 32124227
Alignment:
| Q |
60 |
gattttcgttttaagctgaaaatgtttctttgaaaatcggaacaggtttctgatgaaattgaacaacgaaaccgtatcgatcgagctcaagaacggtaca |
159 |
Q |
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| T |
32124487 |
gattttcgttttaagctgaaaatgtttctttgaaaatcggaacaggtttctgatgaaattgaacaacgaaaccgtatcgatcgagctcaagaacggtaca |
32124388 |
T |
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| Q |
160 |
attgttcatggcaccattacaggttcgtactaacccttccttcttcctctttactgttattacacatctatactgttcacgccgttaaaccctaaaaacc |
259 |
Q |
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| T |
32124387 |
attgttcatggcaccattacaggttcgtactaacccttccttcttcctctttactgttattacacatctatactgttcacgccgttaaaccctaaaaacc |
32124288 |
T |
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| Q |
260 |
cttcgcgctcaaacatttcttatttatcaacatagaatttgtaatgttattgttattattcct |
322 |
Q |
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| T |
32124287 |
cttcgcgctcaaacatttcttatttatcaacatagaatttg--atgttgttgttattattcct |
32124227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 37778606 - 37778683
Alignment:
| Q |
106 |
tttctgatgaaattgaacaacgaaaccgtatcgatcgagctcaagaacggtacaattgttcatggcaccattacaggt |
183 |
Q |
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| T |
37778606 |
tttctcatgaagttgaacaacgaaaccgtctcaatcgagttgaagaatggcactattgttcatggcaccattacaggt |
37778683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 26174769 - 26174722
Alignment:
| Q |
183 |
ttcgtactaacccttccttcttcctctttactgttattacacatctat |
230 |
Q |
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| T |
26174769 |
ttcgtactaacccttacttcttccactttactgttatcaaacatctat |
26174722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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