View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_14 (Length: 336)
Name: NF10190_low_14
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 13699740 - 13699979
Alignment:
| Q |
11 |
aagaaggaacctaaataatgaatagttacccctta-aagacaatccaatggacatacatcataccacaacccaattttaaaagtaagcgaggcctaaagc |
109 |
Q |
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| T |
13699740 |
aagaaggaacttaaataatgaatagttaccccttataagacaataaaatggacatacatcataccacaacccaattttaaaagtaagcgaggcctaaaac |
13699839 |
T |
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| Q |
110 |
agttttgaatatatgggnnnnnnnngtccaactataaaacagttttgcttgtaaaattaataaaatgtaatttattatttgagggtctaaagtgaggatt |
209 |
Q |
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| T |
13699840 |
agttttgaatatatgggttttttttatccaactataaaataattttgattgtaaaattaataaaatgtaatttattatttgagggtctaaagtgagggtt |
13699939 |
T |
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| Q |
210 |
ttagtgatcttacctttgggttgaccatgacacacaccat |
249 |
Q |
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| T |
13699940 |
ttagtggtcttacccttaggtcgaccctgacacacaccat |
13699979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 285 - 320
Target Start/End: Original strand, 13699994 - 13700029
Alignment:
| Q |
285 |
caagaatcattttgagactgcagcagatgtgccaaa |
320 |
Q |
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| T |
13699994 |
caagaatcattttgagattgcagcagatgtgccaaa |
13700029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 126
Target Start/End: Complemental strand, 7584696 - 7584657
Alignment:
| Q |
87 |
taaaagtaagcgaggcctaaagcagttttgaatatatggg |
126 |
Q |
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| T |
7584696 |
taaaagtaagtgagacctaaagcagttttgaatatatggg |
7584657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 11001957 - 11001993
Alignment:
| Q |
86 |
ttaaaagtaagcgaggcctaaagcagttttgaatata |
122 |
Q |
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| T |
11001957 |
ttaaaagtaagcgaggcctagagcagtgttgaatata |
11001993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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