View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_15 (Length: 325)
Name: NF10190_low_15
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 49656259 - 49655991
Alignment:
| Q |
1 |
ggagttaatatataatcagaaaccatgtagaatgtgtttggaatacggtgtctgacgtgaaattctaacttctacaaaacatatctattggaaaagtttg |
100 |
Q |
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| T |
49656259 |
ggagttaatatataatcagaaaccatgtagaatgtgtttggaatacggtgtctgacgtgaaattctaatttctacaaaacatatctattggaaaagtttg |
49656160 |
T |
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| Q |
101 |
attagccacttacttgtctcaatatgatttcattaacaagaacctataaagcacttgaataattggtaacgtcttgaatagttttagacttataattttt |
200 |
Q |
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| T |
49656159 |
attagccacttacttgtctcaatatgatttcattaac-----------aagcacttgaataattggtaacgttttgaatagttttagacttataattttt |
49656071 |
T |
|
| Q |
201 |
taatagacaaacgttagtgattaatttgttaatgttagagtcatatatggaccttttttgtaatactctttcaacatctcaacctatata |
290 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49656070 |
taatagacaaacgttagtgattaatttgttaatgt----------tatggaccttttttgtaatactctttcaacatctcaacctatata |
49655991 |
T |
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