View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10190_low_16 (Length: 322)

Name: NF10190_low_16
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10190_low_16
NF10190_low_16
[»] chr6 (3 HSPs)
chr6 (35-239)||(16847284-16847488)
chr6 (1-238)||(9823339-9823576)
chr6 (184-239)||(1710087-1710142)
[»] chr7 (4 HSPs)
chr7 (1-238)||(25801958-25802195)
chr7 (130-238)||(22710109-22710216)
chr7 (130-238)||(24806671-24806778)
chr7 (189-233)||(6113227-6113271)
[»] chr8 (9 HSPs)
chr8 (1-238)||(6826568-6826805)
chr8 (242-319)||(14118426-14118503)
chr8 (184-240)||(19476004-19476060)
chr8 (184-240)||(19546929-19546985)
chr8 (184-240)||(19585704-19585760)
chr8 (185-229)||(44004182-44004226)
chr8 (189-236)||(9255642-9255689)
chr8 (185-234)||(16247348-16247397)
chr8 (254-290)||(14093133-14093169)
[»] chr3 (5 HSPs)
chr3 (1-240)||(27963378-27963617)
chr3 (130-238)||(12412496-12412603)
chr3 (130-238)||(18150225-18150332)
chr3 (130-238)||(13792133-13792240)
chr3 (189-236)||(53682138-53682185)
[»] chr2 (2 HSPs)
chr2 (1-238)||(18360575-18360812)
chr2 (130-238)||(24221769-24221876)
[»] chr5 (2 HSPs)
chr5 (130-238)||(15274613-15274720)
chr5 (186-236)||(13451004-13451055)
[»] chr4 (3 HSPs)
chr4 (184-238)||(41418031-41418085)
chr4 (130-238)||(1773397-1773504)
chr4 (191-236)||(31943446-31943491)
[»] chr1 (1 HSPs)
chr1 (189-235)||(44196193-44196239)
[»] scaffold0695 (1 HSPs)
scaffold0695 (254-290)||(3281-3317)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 16847488 - 16847284
Alignment:
Q  35 tacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaatgaccgacggacaaaatttcattgccattcgttgagcaaactgcac 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16847488 tacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttacaatgaccgacggacaaaattccattgccattcgttgagcaaactgcac 16847389  T
Q  135 agccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgt 234  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16847388 ggccaatgtggccgtgggtaaatgtttttgcgacctttagctacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgt 16847289  T
Q  235 agtgc 239  Q
    |||||    
T  16847288 agtgc 16847284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 9823339 - 9823576
Alignment:
Q  1 cttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaatgaccgacggac 100  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||  ||||||    
T  9823339 cttttatattttcattggatttcatagaaatacctacagtttatccgtaggtaaaggtctaaaacatatagtgacggccacctagcaatgacatacggac 9823438  T
Q  101 aaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacg 200  Q
    |||||| | ||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9823439 aaaattccgttgccattcgttgagtaaactgcacggccaaagtggtcgtgggtaaatgtttttgcgacctttagctacggagcaatagcctatagtgacg 9823538  T
Q  201 gtttttgtctgtcactacaggtcaaatttcttgtagtg 238  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9823539 gtttttatctgtcactacaggtcaaatttcttgtagtg 9823576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 1710087 - 1710142
Alignment:
Q  184 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgc 239  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| |||||||||||||    
T  1710087 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgc 1710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 25802195 - 25801958
Alignment:
Q  1 cttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaatgaccgacggac 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25802195 cttttatattttcattggatttcatagaaatacctacggtttatccgtatgtaaaggtctaaaacatacagtgacggtcaccttgcaatgaccgacggac 25802096  T
Q  101 aaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacg 200  Q
    |||||| ||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||||||||||| | ||||| |||||| |||||||||||    
T  25802095 aaaattccattgccattcgttgagcaaactacacggccaatgtagccgtggataaatgtttttgcgacctttaactacggaacaatagtctatagtgacg 25801996  T
Q  201 gtttttgtctgtcactacaggtcaaatttcttgtagtg 238  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  25801995 gtttttgtttgtcactacagatcaaatttcttgtagtg 25801958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 22710216 - 22710109
Alignment:
Q  130 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 229  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  22710216 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 22710118  T
Q  230 cttgtagtg 238  Q
    |||||||||    
T  22710117 cttgtagtg 22710109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 238
Target Start/End: Original strand, 24806671 - 24806778
Alignment:
Q  130 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 229  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  24806671 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 24806769  T
Q  230 cttgtagtg 238  Q
    |||||||||    
T  24806770 cttgtagtg 24806778  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 6113271 - 6113227
Alignment:
Q  189 cctatagtgacggtttttgtctgtcactacaggtcaaatttcttg 233  Q
    ||||||||||||| ||||| || |||||||| |||||||||||||    
T  6113271 cctatagtgacggattttggctatcactacaagtcaaatttcttg 6113227  T

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Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 6826805 - 6826568
Alignment:
Q  1 cttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaatgaccgacggac 100  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||  ||||||    
T  6826805 cttttatattttcattggatttcatagaaatacctacagtttatccgtaggtaaaggtctaaaacatatagtgacggccacctagcaatgacatacggac 6826706  T
Q  101 aaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacg 200  Q
    |||||| | ||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6826705 aaaattccgttgccattcgttgagtaaactgcacggccaaagtggtcgtgggtaaatgtttttgcgacctttagctacggagcaatagcctatagtgacg 6826606  T
Q  201 gtttttgtctgtcactacaggtcaaatttcttgtagtg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6826605 gtttttgtctgtcactacaggtcaaatttcttgtagtg 6826568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 319
Target Start/End: Complemental strand, 14118503 - 14118426
Alignment:
Q  242 tgacattgagtcagtaagccatttgtttgcaacatgtctaaagacttgggaaatttaggaaactattttcaatggttg 319  Q
    |||| |||||||||||||||||||||||||||||||||   ||||||||||||||  | ||| |||||||||||||||    
T  14118503 tgaccttgagtcagtaagccatttgtttgcaacatgtccggagacttgggaaattcggaaaagtattttcaatggttg 14118426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 19476060 - 19476004
Alignment:
Q  184 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 240  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  19476060 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19476004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 19546985 - 19546929
Alignment:
Q  184 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 240  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  19546985 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19546929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 240
Target Start/End: Original strand, 19585704 - 19585760
Alignment:
Q  184 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtgca 240  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||||    
T  19585704 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtgca 19585760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 44004226 - 44004182
Alignment:
Q  185 atagcctatagtgacggtttttgtctgtcactacaggtcaaattt 229  Q
    ||||||||| |||||||||||||||| |||||||| |||||||||    
T  44004226 atagcctattgtgacggtttttgtctctcactacatgtcaaattt 44004182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 9255689 - 9255642
Alignment:
Q  189 cctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtag 236  Q
    ||||||||||||| ||||| ||||||||| | ||||||||||||||||    
T  9255689 cctatagtgacggattttggctgtcactataagtcaaatttcttgtag 9255642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 16247397 - 16247348
Alignment:
Q  185 atagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgt 234  Q
    ||||||| ||||||||||||||| | ||||||| ||||||| ||||||||    
T  16247397 atagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgt 16247348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 14093169 - 14093133
Alignment:
Q  254 agtaagccatttgtttgcaacatgtctaaagacttgg 290  Q
    |||||||||||||||||||||||||| | ||||||||    
T  14093169 agtaagccatttgtttgcaacatgtccagagacttgg 14093133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 27963617 - 27963378
Alignment:
Q  1 cttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaatgaccgacggac 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||| ||||||||  ||||||    
T  27963617 cttttatattttcattggatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatatagtgacgaccacctagcaatgacatacggac 27963518  T
Q  101 aaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacg 200  Q
    |||||| | ||||||||||||||| ||||||||| ||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  27963517 aaaattccgttgccattcgttgagtaaactgcacggccaaagtggctgtgggtaaatgtttttgcgacctttagctacagagcaatagcctatagtgacg 27963418  T
Q  201 gtttttgtctgtcactacaggtcaaatttcttgtagtgca 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27963417 gtttttgtctgtcactacaggtcaaatttcttgtagtgca 27963378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 12412603 - 12412496
Alignment:
Q  130 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 229  Q
    ||||| ||||||||||| |||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  12412603 tgcacggccaatgtggctgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 12412505  T
Q  230 cttgtagtg 238  Q
    |||||||||    
T  12412504 cttgtagtg 12412496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 18150332 - 18150225
Alignment:
Q  130 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 229  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  18150332 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 18150234  T
Q  230 cttgtagtg 238  Q
    |||||||||    
T  18150233 cttgtagtg 18150225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 13792240 - 13792133
Alignment:
Q  130 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 229  Q
    ||||| |||||||||||||||| | || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||  ||||||| |||    
T  13792240 tgcacggccaatgtggccgtggatgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcacttgaggtcaagttt 13792142  T
Q  230 cttgtagtg 238  Q
    |||||||||    
T  13792141 cttgtagtg 13792133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 53682185 - 53682138
Alignment:
Q  189 cctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtag 236  Q
    ||||||||||||| ||||| ||||||||| | ||||||||||||||||    
T  53682185 cctatagtgacggattttggctgtcactaaaagtcaaatttcttgtag 53682138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18360812 - 18360575
Alignment:
Q  1 cttttatattttcattgaatttcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatacagtgacggtcaccttgcaatgaccgacggac 100  Q
    |||| ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||     
T  18360812 ctttgatattttcattgggtctcatagaaatacctacggtttatccgtaggtaaaggtctaaaacatatagtgacggccacctagcaatgacagatggat 18360713  T
Q  101 aaaatttcattgccattcgttgagcaaactgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacg 200  Q
    ||||||   ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||    
T  18360712 aaaattctgttgccattcgttgagcaaactgcacagtcagtgtggccgtgggtaaatatttttgcgaccttcagctacggagcaatagcctatagtgacg 18360613  T
Q  201 gtttttgtctgtcactacaggtcaaatttcttgtagtg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18360612 gtttttgtctgtcactacaggtcaaatttcttgtagtg 18360575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 24221876 - 24221769
Alignment:
Q  130 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 229  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  24221876 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 24221778  T
Q  230 cttgtagtg 238  Q
    |||||||||    
T  24221777 cttgtagtg 24221769  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 15274720 - 15274613
Alignment:
Q  130 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 229  Q
    ||||| |||||| ||||||||||| || ||||| || || | || | |||||  |||||||| ||||||||||||||| | ||||||| ||||||| |||    
T  15274720 tgcacggccaatatggccgtgggtgaaagttttggccacatatacctacggaa-aatagcctttagtgacggtttttgcccgtcactagaggtcaagttt 15274622  T
Q  230 cttgtagtg 238  Q
    |||||||||    
T  15274621 cttgtagtg 15274613  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 13451004 - 13451055
Alignment:
Q  186 tagcctatagtgacggtttttgtctgtcactac-aggtcaaatttcttgtag 236  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||||||||||    
T  13451004 tagcctgtagtgacgggttttgtctgtcactacaaggtcaaatttcttgtag 13451055  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 41418031 - 41418085
Alignment:
Q  184 aatagcctatagtgacggtttttgtctgtcactacaggtcaaatttcttgtagtg 238  Q
    |||||||| ||||||||||||||| | ||||||| ||||||| ||||||||||||    
T  41418031 aatagcctttagtgacggtttttgcccgtcactagaggtcaagtttcttgtagtg 41418085  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 1773504 - 1773397
Alignment:
Q  130 tgcacagccaatgtggccgtgggtaaatgtttttgcgacctttagccacggagcaatagcctatagtgacggtttttgtctgtcactacaggtcaaattt 229  Q
    ||||| |||||||||||||||||| || ||||| || || | || | | |||  |||||||| |||||| |||||||| | ||||||| ||||||| |||    
T  1773504 tgcacggccaatgtggccgtgggtgaaagttttggccacatatacctatggaa-aatagcctttagtgatggtttttgcccgtcactagaggtcaagttt 1773406  T
Q  230 cttgtagtg 238  Q
    |||||||||    
T  1773405 cttgtagtg 1773397  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 31943491 - 31943446
Alignment:
Q  191 tatagtgacggtttttgtctgtcactacaggtcaaatttcttgtag 236  Q
    ||||||||||| | ||| ||||||||||| ||||||||||||||||    
T  31943491 tatagtgacggatattggctgtcactacaagtcaaatttcttgtag 31943446  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 235
Target Start/End: Complemental strand, 44196239 - 44196193
Alignment:
Q  189 cctatagtgacggtttttgtctgtcactacaggtcaaatttcttgta 235  Q
    ||||||||||||| ||||| ||||||||| | |||||||||||||||    
T  44196239 cctatagtgacggattttggctgtcactaaaagtcaaatttcttgta 44196193  T

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Target: scaffold0695 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 3281 - 3317
Alignment:
Q  254 agtaagccatttgtttgcaacatgtctaaagacttgg 290  Q
    |||||||||||||||||||||||||| | ||||||||    
T  3281 agtaagccatttgtttgcaacatgtccagagacttgg 3317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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