View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_17 (Length: 321)
Name: NF10190_low_17
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 54688756 - 54688470
Alignment:
| Q |
17 |
catcaagaccacacccactcattcttaaatcgaatgaacatttagacaccttattaagatcttccaatgaaacctcctcatcatcattgattttccataa |
116 |
Q |
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| T |
54688756 |
catcaagaccacacccactcattcttaaatgtaatgaacatttagacaccttattaagatcttccaatgaaacctcctcatcatcattgattttccataa |
54688657 |
T |
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| Q |
117 |
aattgatggcttgcaaaacttgatcgagtgtgttgaaaaattggttcagcttccactaacacaagatgcacttctgcatgagcaccaagaaaatggggta |
216 |
Q |
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| T |
54688656 |
aattgatggcttgcaaaacttgatcgagtgtgttgaaaaattggttcagcttccactaacacaagatgcacttctacatgagcatcaagaaaatggggta |
54688557 |
T |
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| Q |
217 |
aataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagg |
303 |
Q |
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| T |
54688556 |
aataaccttttggatggttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagg |
54688470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 54700695 - 54700403
Alignment:
| Q |
17 |
catcaagaccacacccactcattcttaaatcgaatgaacatttagacaccttattaagatcttccaatgaaacc------tcctcatcatcattgatttt |
110 |
Q |
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|||| ||||||||||||||||| ||||||| ||||||||||| |||||||| ||||| |||| ||||||||| ||||| ||| ||| | ||| |
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| T |
54700695 |
catctagaccacacccactcatgcttaaatgcaatgaacatttggacaccttgttaagggcttcaaatgaaaccacctcttcctcctcaacatcgctttg |
54700596 |
T |
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| Q |
111 |
ccataaaattgatggcttgcaaaacttgatcgagtgtgttgaaaaattggttcagcttccactaacacaagatgcacttctgcatgagcaccaagaaaat |
210 |
Q |
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| T |
54700595 |
caataaaattggaggcttgcgagatttgattgagtgtgttgaaaaattgattcagcttccactcactcaagatgcacttctccatgagcatcaagaaaat |
54700496 |
T |
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| Q |
211 |
ggggtaaataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaagg |
303 |
Q |
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||||||||||||| |||||| | |||||||||||||||||||||||||| ||||| |||||||||||| | || ||||||||||| |||||| |
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| T |
54700495 |
tgggtaaataacctcttggatggatccttaaggctattagatgtgtgtagcgcagccaaagatgctttactgcatacaaaagaatgtacaagg |
54700403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 22 - 303
Target Start/End: Complemental strand, 54693328 - 54693042
Alignment:
| Q |
22 |
agaccacacccactcattcttaaatcgaatgaacatttagacaccttattaagatcttccaatgaaacctcctcatcatcattgattttccataaaattg |
121 |
Q |
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||||||||||||||||||||| ||| ||| ||||||| ||||||||| |||| |||||||||||||||||||| |||| || || |||||| |||| |
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| T |
54693328 |
agaccacacccactcattcttcaatgcaatcaacatttggacaccttactaaggtcttccaatgaaacctcctcgtcat---tgcttcaccataagattg |
54693232 |
T |
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| Q |
122 |
atggcttgcaaaacttgatcgagtgtgttgaaaaattggttcagcttccactaacacaagatgca----cttctgcatgagcaccaagaaaatggggtaa |
217 |
Q |
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||||||| | | ||| |||||||||||||||| || |||||||| |||| || | ||||||| ||| | |||||||| ||||| || |||||| |
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| T |
54693231 |
gaggcttgcgagatttggtcgagtgtgttgaaaatttaattcagctttcactcactcgagatgcatgcccttgtccatgagcatcaagagaaatgggtaa |
54693132 |
T |
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| Q |
218 |
ataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaa----agatgctttaattcacacaaaagaatgcacaagg |
303 |
Q |
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| T |
54693131 |
atgacttgtttgatggatccctaagactcttagatgtgtgcagtgcagctaattaaagatgctttacttcacacaaaagaatgcacaagg |
54693042 |
T |
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