View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10190_low_18 (Length: 312)

Name: NF10190_low_18
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10190_low_18
NF10190_low_18
[»] chr3 (1 HSPs)
chr3 (5-302)||(4810101-4810385)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 5 - 302
Target Start/End: Original strand, 4810101 - 4810385
Alignment:
Q  5 catagttgaatttatccacaacatatatcacaaagtatattattatgccttgttgcatgcgtgctttagaaacgcatgctatcttctgctggatggctct 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||   |||||||| |||||||||||    
T  4810101 catagttgaatttatccacaacatatatcacaaagtatattattatgccttgttgcatgcgtgc----------cat---atcttctgttggatggctct 4810187  T
Q  105 tatataccattagatgtcttcttgtctggtgatttcttgtgtgtggcatttaaacaggaggcttatatattggtggcttataaactggtgatgtcacaat 204  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4810188 tatataccattagatgtcttcttgtatggtgatttcttgtgtgtggcatttaaacaggaggcttatatattggtggcttataaactggtgatgtcacaat 4810287  T
Q  205 cggaggattgtagactggaggcctgtggatgtttatctataagttgtttgtaagaatcagcatgcacatgaggaacaagcataagagaagcaaggaac 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4810288 cggaggattgtagactggaggcctgtggatgtttatctataagttgtttgtaagaatcagcatgcacatgaggaacaagcataagagaagcaaggaac 4810385  T

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