View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_19 (Length: 293)
Name: NF10190_low_19
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 143 - 287
Target Start/End: Complemental strand, 6073552 - 6073408
Alignment:
| Q |
143 |
gaggaacttacagagtcatcattttctgtagaaggatttgtagtgaatagaacagagagagttgcaatgaaaaggagagagaacatagcagaaataaaga |
242 |
Q |
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| T |
6073552 |
gaggaacttacagagtcatcattttctgtagaaggatttgtagtgaatagaacagagagagttgcaatgaaaaggagagagaacatagcagaaataaaga |
6073453 |
T |
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| Q |
243 |
tccggtaagagaagaatccacgaagggtagatccacctttgcttc |
287 |
Q |
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| T |
6073452 |
tccggtaagagaagaatccacgaagagtagatccacctctgcttc |
6073408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 6073682 - 6073624
Alignment:
| Q |
15 |
aattaacatatgggttatgcttaaaactgaatctaaaataaagggtcatttccaatttc |
73 |
Q |
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| T |
6073682 |
aattaacatatgggttatgcttaaaactgaatctaaaataaagggtcatttccaatttc |
6073624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 6074221 - 6074163
Alignment:
| Q |
15 |
aattaacatatgggttatgcttaaaactgaatctaaaataaagggtcatttccaatttc |
73 |
Q |
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| T |
6074221 |
aattaacatatgggttatgcttaaaactgaatctaaaatgaagggtcatttccaatttc |
6074163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 6073937 - 6073898
Alignment:
| Q |
15 |
aattaacatatgggttatgcttaaaactgaatctaaaata |
54 |
Q |
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| T |
6073937 |
aattagcacatgggttatgcttaaaactgaatctaaaata |
6073898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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