View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_2 (Length: 599)
Name: NF10190_low_2
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 557; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 18 - 586
Target Start/End: Complemental strand, 6808859 - 6808291
Alignment:
| Q |
18 |
ctagtcactcatgatgtttgtatttttcagcttgttaaggactccatgccgcctaatttctatgaacgttataataaggatgggaaaacagcaaagcagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808859 |
ctagtcactcatgatgtttgtatttttcagcttgttaaggactccatgccgcctaatttctatgaacgttataataaggatgggaaaacagcaaagcagg |
6808760 |
T |
|
| Q |
118 |
tcttcattgacacacacggacaacttgtaaaagaaggtggtaaatggctcaccaaaaccgcagaatcatgctcagtggtagcagcacttgttgcaagtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808759 |
tcttcattgacacacacggacaacttgtaaaagaaggtggtaaatggctcaccaaaactgcagaatcatgctcagtggtagcagcacttgttgcaagtgt |
6808660 |
T |
|
| Q |
218 |
tgcattcacaacctcaacatctatcccaggtggttatgatgatgatggtataccaatattcctaaaaaagcctgtttgcaaactatatgctgtagcatca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6808659 |
tgcattcacaacctcaacatctatcccaggtggttatgatgatgatggtataccaatattcctaaaaaagcctgttttcaaactatatgctgtagcatca |
6808560 |
T |
|
| Q |
318 |
cttgttgcactttgctcctctgtcatggctcttgttatgtttctttcgatactaacgtctcggtttcaagaaaaggattttcttgtggacttaccaaaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6808559 |
cttgttgcactttgctcctctgtcatggctcttgttatgtttctttcgatactaacgtctcggtttcaagaaaaggattttcttgtggacttaccaaaaa |
6808460 |
T |
|
| Q |
418 |
agcttcttctagggttgactacactcttcacatctatagcatctgtattggtctcattctgtgcagggcatttcttcattgttgaacaccagctgagaac |
517 |
Q |
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| T |
6808459 |
agcttcttctagggttgactacactcttcacatctatagcatctgtattggtctcattctgtgcagggcatttcttcattgttgaacaccagctgagaac |
6808360 |
T |
|
| Q |
518 |
tgcagtttatcccatatatgctttaacatgtttgcctgtgtcattttttgccttggtccaactccctct |
586 |
Q |
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| T |
6808359 |
tgcagtttatcccatatatgctttaacatgtttgcctgtgtccttttttgccttggtccaactccctct |
6808291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 586
Target Start/End: Complemental strand, 6831251 - 6830680
Alignment:
| Q |
18 |
ctagtcactcatgatgtttgtatttttcagcttgttaaggactccatgccgcctaatttctatgaacgttataataaggatgggaaaacagcaaagcagg |
117 |
Q |
| |
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||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6831251 |
ctagttactcataatgtttgtgtttttcagcttgttaagaactccatgccgcctaatttctatgaacgttataataaggatgggaaaacagcaaagcaag |
6831152 |
T |
|
| Q |
118 |
tcttcattgacacacacggacaacttgtaaaagaaggtggtaaatggctcaccaaaaccgcagaatcatgctcagtggtagcagcacttgttgcaagtgt |
217 |
Q |
| |
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|||||||||| ||||||| || |||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
6831151 |
tcttcattgatacacacgcaccacttacaaaagaaggtagtaaatggctcaccaaaaccgcagaatcttgctcagtggtagcagcacttgttgcaactgt |
6831052 |
T |
|
| Q |
218 |
tgcattcacaacctcaacatctatcccaggtggttatgatgatgat---ggtataccaatattcctaaaaaagcctgtttgcaaactatatgctgtagca |
314 |
Q |
| |
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||||||||||||||| ||| |||||||||||||| |||| | || ||||| ||| || | ||| ||||||||| || |||||| |||||||||||| |
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| T |
6831051 |
tgcattcacaacctcgacagctatcccaggtggtcctgatcaagaatccggtatgccactactgctagaaaagcctgctttcaaactctatgctgtagca |
6830952 |
T |
|
| Q |
315 |
tcacttgttgcactttgctcctctgtcatggctcttgttatgtttctttcgatactaacgtctcggtttcaagaaaaggattttcttgtggacttaccaa |
414 |
Q |
| |
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|||||||||||||||||||||||||||| || |||||| |||||||||| ||||| || ||||||||| ||||||| |||||| || | |||||||||| |
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| T |
6830951 |
tcacttgttgcactttgctcctctgtcacagcccttgttttgtttctttccatactcacatctcggtttgaagaaaaagattttgttattgacttaccaa |
6830852 |
T |
|
| Q |
415 |
aaaagcttcttctagggttgactacactcttcacatctatagcatctgtattggtctcattctgtgcagggcatttcttcattgttgaacaccagctgag |
514 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||| |||| |||| |
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| T |
6830851 |
gaaagcttcttgtagggttgactacactcttcacatctatagcatctgtgttggtctcattctgtgcaggacatttctttattgtcgaagcccagatgag |
6830752 |
T |
|
| Q |
515 |
aactgcagtttatcccatatatgctttaacatgtttgcctgtgtcattttttgccttggtccaactccctct |
586 |
Q |
| |
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| ||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||||||||||| |
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| T |
6830751 |
atttgcagtttatcccatatatgccgcaacatgtctgcctgtatccttttttgccttggtccaactccctct |
6830680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 26 - 586
Target Start/End: Complemental strand, 6816815 - 6816252
Alignment:
| Q |
26 |
tcatgatgtttgtatttttcagcttgttaaggactccatgccgcctaatttctatgaacgttataataaggatgggaaaacagcaaagcaggtcttcatt |
125 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
6816815 |
tcatgatgttcatgtttttcagcttgttaagaactcaatgccaccaaatttctatgaacgttataacaaggatgggaaaacagcaaagcaagtcttcatt |
6816716 |
T |
|
| Q |
126 |
gacacacacggacaacttgtaaaagaaggtggtaaatggctcaccaaaaccgcagaatcatgctcagtggtagcagcacttgttgcaagtgttgcattca |
225 |
Q |
| |
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|| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |
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| T |
6816715 |
gagacacacgcaccacttgtaaaagaaggtagtaaatggctcaccaaaaccgcagaatcatgctcggtggtagcagcacttgctgcagctgttgcattca |
6816616 |
T |
|
| Q |
226 |
caacctcaacatctatcccaggtggttatgatga---tgatggtataccaatattcctaaaaaagcctgtttgcaaactatatgctgtagcatcacttgt |
322 |
Q |
| |
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|||||||||||||||||||||||||| | || | | ||||||||||| |||| | ||| | |||| || |||||| ||||||| |||||||||||| |
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| T |
6816615 |
caacctcaacatctatcccaggtggtcctaatcaaaataatggtataccactatttatgaaagaacctgcttacaaactctatgctgcagcatcacttgt |
6816516 |
T |
|
| Q |
323 |
tgcactttgctcctctgtcatggctcttgttatgtttctttcgatactaacgtctcggtttcaagaaaaggattttcttgtggacttaccaaaaaagctt |
422 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||||||||||||| || ||| ||||| ||||||| |||||| ||||||||||||||| || |||| |
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| T |
6816515 |
tgcactttgcttctctgtcacagctcttgtttcgtttctttcgatactcacatctaggtttgaagaaaaagattttgttgtggacttaccaagaaggctt |
6816416 |
T |
|
| Q |
423 |
cttctagggttgactacactcttcacatctatagcatctgtattggtctcattctgtgcagggcatttcttcattgttgaacaccagctgagaactgcag |
522 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| ||| |||||||||| |||||||||| |||| |
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| T |
6816415 |
cttgtagggttgactacactcttcacatctatagcatctgtgttgatctcattctgtgcaggacattactttattgttgaaccccagctgagatttgcat |
6816316 |
T |
|
| Q |
523 |
tttatcccatatatgctttaacatgtttgcctgtgtcattttttgccttggtccaactccctct |
586 |
Q |
| |
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||||||| ||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||| |
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| T |
6816315 |
tttatccaatatatgctgcaacatgtttgcctgtgtccttttttgccttggttcaacttcctct |
6816252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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