View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10190_low_22 (Length: 269)

Name: NF10190_low_22
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10190_low_22
NF10190_low_22
[»] chr3 (2 HSPs)
chr3 (19-245)||(45382702-45382937)
chr3 (162-208)||(47362558-47362604)
[»] chr6 (12 HSPs)
chr6 (157-237)||(27661703-27661783)
chr6 (157-194)||(26650237-26650274)
chr6 (157-194)||(26756205-26756242)
chr6 (153-193)||(12627824-12627864)
chr6 (157-197)||(29449688-29449728)
chr6 (82-132)||(8148268-8148318)
chr6 (85-138)||(20809178-20809231)
chr6 (157-186)||(28783014-28783043)
chr6 (139-196)||(34057962-34058019)
chr6 (83-119)||(29670971-29671007)
chr6 (160-196)||(30537508-30537544)
chr6 (85-133)||(31811989-31812037)
[»] chr7 (4 HSPs)
chr7 (157-197)||(43160491-43160531)
chr7 (148-195)||(10893872-10893919)
chr7 (157-199)||(650524-650566)
chr7 (157-193)||(18750887-18750923)
[»] chr5 (4 HSPs)
chr5 (157-196)||(28136673-28136712)
chr5 (157-194)||(645342-645379)
chr5 (148-193)||(11601688-11601733)
chr5 (85-133)||(12478334-12478382)
[»] chr8 (4 HSPs)
chr8 (90-132)||(14229600-14229642)
chr8 (157-197)||(32691750-32691790)
chr8 (148-196)||(41686804-41686852)
chr8 (148-196)||(31681833-31681881)
[»] chr2 (1 HSPs)
chr2 (103-199)||(9956949-9957045)
[»] chr4 (4 HSPs)
chr4 (157-207)||(10164460-10164510)
chr4 (157-195)||(28890768-28890806)
chr4 (153-189)||(29388374-29388410)
chr4 (157-197)||(45615427-45615467)
[»] chr1 (3 HSPs)
chr1 (148-193)||(264615-264660)
chr1 (97-137)||(27835482-27835522)
chr1 (157-193)||(43609830-43609866)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 45382937 - 45382702
Alignment:
Q  19 tgtatgacaattaagtttcatagaagtggagaaagcaaaggaagtgactaattggtaaataatgaactttgtagcacagacatttctgatcgaaggcatg 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  45382937 tgtatgacaat-aagtttcatagaagtggagaaagcaaaggaattgactaattggtaaataatgaactttgtagcaca-atacttctgatcgaaggcatg 45382840  T
Q  119 tccggtgtccgacatttgtctgtgtc-----------tgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactgatgttgac 207  Q
    ||||||||||||||||||||||||||           ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382839 tccggtgtccgacatttgtctgtgtctgacaccaacatgtcaccgacatatgtgattacattcaaatatgttattttcttaaattactactgatgttgac 45382740  T
Q  208 gaatgagtgtcagtgtggagtccggtgttcatgtctct 245  Q
    |||||| |||||||||| ||||| ||||||||||||||    
T  45382739 gaatgaatgtcagtgtgaagtccagtgttcatgtctct 45382702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 47362604 - 47362558
Alignment:
Q  162 attacattcaaatatgttattttcttaaattactactgatgttgacg 208  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  47362604 attacattcaattatgtaattttcttaaattattactgatgttgacg 47362558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 27661783 - 27661703
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattactactgatgttgacgaatgagtgtcagtgtggagtccggtgttc 237  Q
    ||||||||||||| |||||| |||||||||||||||||||   |||||||||||| ||||| ||||| |||| ||||||||    
T  27661783 atgtgattacattgaaatatattattttcttaaattactatcaatgttgacgaatcagtgttagtgtcgagttcggtgttc 27661703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 26650237 - 26650274
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattac 194  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26650237 atgtgattacattcaaatatgttattttcttaaattac 26650274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 194
Target Start/End: Original strand, 26756205 - 26756242
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattac 194  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26756205 atgtgattacattcaaatatgttattttcttaaattac 26756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 12627824 - 12627864
Alignment:
Q  153 acatatgtgattacattcaaatatgttattttcttaaatta 193  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12627824 acatatatgattacattgaaatatgttattttcttaaatta 12627864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 29449728 - 29449688
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattactac 197  Q
    |||||||||||||||| ||||||||||||| ||||||||||    
T  29449728 atgtgattacattcaattatgttattttctgaaattactac 29449688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 8148268 - 8148318
Alignment:
Q  82 gaactttgtagcacagacatttctgatcgaaggcatgtccggtgtccgaca 132  Q
    ||||| |||||||| |||||||| ||| ||||||||||| |||||||||||    
T  8148268 gaactatgtagcaccgacatttccgatggaaggcatgtctggtgtccgaca 8148318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 20809178 - 20809231
Alignment:
Q  85 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacatttgtc 138  Q
    ||||||||||  |||| ||  |||||||||||||||||||||||||||| ||||    
T  20809178 ctttgtagcatcgacactttggatcgaaggcatgtccggtgtccgacatgtgtc 20809231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 28783014 - 28783043
Alignment:
Q  157 atgtgattacattcaaatatgttattttct 186  Q
    ||||||||||||||||||||||||||||||    
T  28783014 atgtgattacattcaaatatgttattttct 28783043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 34058019 - 34057962
Alignment:
Q  139 tgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattacta 196  Q
    |||||||| |||| ||| ||||||||||| |||| ||||| ||||||||| |||||||    
T  34058019 tgtgtctgacaccgacacatgtgattacagtcaattatgtcattttcttatattacta 34057962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Complemental strand, 29671007 - 29670971
Alignment:
Q  83 aactttgtagcacagacatttctgatcgaaggcatgt 119  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  29671007 aactttgtaccaccgacatttctgatcgaaggcatgt 29670971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 30537544 - 30537508
Alignment:
Q  160 tgattacattcaaatatgttattttcttaaattacta 196  Q
    |||| |||||||| |||||||||||||||||||||||    
T  30537544 tgataacattcaattatgttattttcttaaattacta 30537508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 31812037 - 31811989
Alignment:
Q  85 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 133  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||||||||    
T  31812037 ctttgtagcactgacacctctgatcaaaggcatgtccagtgtccgacat 31811989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 43160531 - 43160491
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattactac 197  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  43160531 atgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 10893872 - 10893919
Alignment:
Q  148 caccaacatatgtgattacattcaaatatgttattttcttaaattact 195  Q
    |||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  10893872 caccaacacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 650566 - 650524
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattactactg 199  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||    
T  650566 atgtgattgcattcaattatgtcattttcttaaattactactg 650524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 18750923 - 18750887
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaatta 193  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  18750923 atgtgattacattcaattatgtcattttcttaaatta 18750887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 28136712 - 28136673
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattacta 196  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28136712 atgtgattacattgaaatatgttattttcttaaattacta 28136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 645379 - 645342
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattac 194  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  645379 atgtgattacattcaattatgtcattttcttaaattac 645342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 11601733 - 11601688
Alignment:
Q  148 caccaacatatgtgattacattcaaatatgttattttcttaaatta 193  Q
    ||||||||||||||||||||||||| ||  ||| ||||||||||||    
T  11601733 caccaacatatgtgattacattcaattaatttagtttcttaaatta 11601688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 12478382 - 12478334
Alignment:
Q  85 ctttgtagcacagacatttctgatcgaaggcatgtccggtgtccgacat 133  Q
    ||||||||||| |||||||||||| |||||| |||| |||||| |||||    
T  12478382 ctttgtagcaccgacatttctgatggaaggcgtgtctggtgtctgacat 12478334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 14229642 - 14229600
Alignment:
Q  90 tagcacagacatttctgatcgaaggcatgtccggtgtccgaca 132  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  14229642 tagcactgacacttctgatcgaaggcatgtccggtgtccgaca 14229600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 32691790 - 32691750
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattactac 197  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  32691790 atgtgattacattcaattatgtcattttcttaaattactac 32691750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 41686804 - 41686852
Alignment:
Q  148 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 196  Q
    |||||||| ||||||||| | |||| |||||||||||||||||||||||    
T  41686804 caccaacacatgtgattagactcaactatgttattttcttaaattacta 41686852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 31681833 - 31681881
Alignment:
Q  148 caccaacatatgtgattacattcaaatatgttattttcttaaattacta 196  Q
    |||| ||| |||||||| ||||||| ||||| |||||||||||||||||    
T  31681833 caccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 9956949 - 9957045
Alignment:
Q  103 tctgatcgaaggcatgtccggtgtccgacatttgtctgtgtctgtcaccaacatatgtgattacattcaaatatgttattttcttaaattactactg 199  Q
    ||||||| ||||||||||||||||| ||||| |||| ||||| | |||  ||| |||| ||||| ||||||||  ||||||| | |||||| |||||    
T  9956949 tctgatcaaaggcatgtccggtgtctgacatgtgtcggtgtccggcacggacacatgtcattacgttcaaataatttattttgtcaaattattactg 9957045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 10164510 - 10164460
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattactactgatgttgac 207  Q
    |||||||||||||||| ||||  |||||||||||||||||| | |||||||    
T  10164510 atgtgattacattcaattatgccattttcttaaattactaccggtgttgac 10164460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Complemental strand, 28890806 - 28890768
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattact 195  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  28890806 atgtgattgcattcaattatgttattttcttaaattact 28890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 29388374 - 29388410
Alignment:
Q  153 acatatgtgattacattcaaatatgttattttcttaa 189  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  29388374 acatatgtgattacattcaattatgtcattttcttaa 29388410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Original strand, 45615427 - 45615467
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaattactac 197  Q
    |||||||||| ||||| ||||| ||||||||||||||||||    
T  45615427 atgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 264660 - 264615
Alignment:
Q  148 caccaacatatgtgattacattcaaatatgttattttcttaaatta 193  Q
    |||||||| ||||||||||||| || ||||||| ||||||||||||    
T  264660 caccaacacatgtgattacatttaagtatgttactttcttaaatta 264615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 27835522 - 27835482
Alignment:
Q  97 gacatttctgatcgaaggcatgtccggtgtccgacatttgt 137  Q
    |||| ||||||| ||||||||||| ||||||||||||||||    
T  27835522 gacacttctgattgaaggcatgtctggtgtccgacatttgt 27835482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 43609830 - 43609866
Alignment:
Q  157 atgtgattacattcaaatatgttattttcttaaatta 193  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  43609830 atgtgattacattcaattatgttattttctcaaatta 43609866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University