View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10190_low_27 (Length: 251)

Name: NF10190_low_27
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10190_low_27
NF10190_low_27
[»] chr2 (2 HSPs)
chr2 (157-241)||(28249495-28249579)
chr2 (3-127)||(28249307-28249431)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 28249495 - 28249579
Alignment:
Q  157 tagtttgatcattcgtctctactctctagaatcacttatattcaagaaaacgattcgttcaaacagccatcattcttgttctctg 241  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  28249495 tagtttgatcattcgtctcaactctccagactcacttatattcaagaaaacgattcgttcaaacagccatcactcttgttgtctg 28249579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 28249307 - 28249431
Alignment:
Q  3 tagcaaatttcggagaaaaaattgcacagacattacacacattattat---atgacaggacnnnnnnntttgtttagtccaagcttggacgttgaattcc 99  Q
    ||||||||||||| |||||||||| | |||||||||||||||||||||   |||| |||||         ||||||||| ||||||||||||||||||||    
T  28249307 tagcaaatttcggggaaaaaattgtaaagacattacacacattattattatatgagaggacaaaaaa---tgtttagtctaagcttggacgttgaattcc 28249403  T
Q  100 aatacttgacttggaagaaatttgacaa 127  Q
    ||||||||||||||||||||||||||||    
T  28249404 aatacttgacttggaagaaatttgacaa 28249431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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