View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_29 (Length: 250)
Name: NF10190_low_29
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 8482822 - 8482621
Alignment:
| Q |
1 |
tttgacatagtaaccattcaagaggttgatcaaaacatcatcatgagtacaaagtatttccaatgttccagatcgccaccactagtctggaaagat-agt |
99 |
Q |
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| T |
8482822 |
tttgacatagtaaccattcaagaggttgatcaaaacatcatcataagtacaaagtatttccaatgttccagatcaccaccactagtctggaaagataagt |
8482723 |
T |
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| Q |
100 |
gactttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaataaaaactacactaagagtgtgtttggatagagaat |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |
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| T |
8482722 |
gagtttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaataaaaactcctcta--agtgtgtttggatagagaat |
8482625 |
T |
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| Q |
200 |
ttta |
203 |
Q |
| |
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|||| |
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| T |
8482624 |
ttta |
8482621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 64 - 240
Target Start/End: Original strand, 8355517 - 8355690
Alignment:
| Q |
64 |
tgttccagatcgccaccactagtctggaaagatagtgactttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaa |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8355517 |
tgttccagatcgccaccactagtctggaaagatagtgagtttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaag---agaa |
8355613 |
T |
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| Q |
164 |
taaaaactacactaagagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttg |
240 |
Q |
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| T |
8355614 |
taaaaactacactaaaagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttg |
8355690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 37485994 - 37486059
Alignment:
| Q |
106 |
gttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaataaaaactaca |
174 |
Q |
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| T |
37485994 |
gttatgaacaacttttgggttgttcataaatggaagagaaactatgctaag---agaataaaaactaca |
37486059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 36866344 - 36866296
Alignment:
| Q |
103 |
tttgttatgaacaacttttgggatgttcctaaatagaagagaaattata |
151 |
Q |
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||||||||||||||||||| || ||||| ||||| ||||||||||||| |
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| T |
36866344 |
tttgttatgaacaactttttggttgttcataaatgaaagagaaattata |
36866296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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