View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10190_low_3 (Length: 487)

Name: NF10190_low_3
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10190_low_3
NF10190_low_3
[»] chr4 (1 HSPs)
chr4 (2-467)||(21826659-21827120)
[»] chr7 (2 HSPs)
chr7 (1-397)||(39602496-39602897)
chr7 (310-391)||(46974220-46974301)
[»] chr2 (4 HSPs)
chr2 (183-323)||(38414709-38414849)
chr2 (219-334)||(9010205-9010320)
chr2 (360-420)||(9010143-9010203)
chr2 (44-103)||(9010472-9010531)
[»] chr3 (1 HSPs)
chr3 (15-103)||(11197921-11198009)
[»] chr5 (1 HSPs)
chr5 (381-420)||(23950530-23950569)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 2 - 467
Target Start/End: Original strand, 21826659 - 21827120
Alignment:
Q  2 aagtaaagaattcacaatcactcttatccttgtttagacat-aaacttatgttattctaagaacatgatttcatgctcaaataaccaaaccttaaaagca 100  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||  || | ||||||||||||||||||||||||||||||   |    
T  21826659 aagtaaaaaattcacaatcactcatatccttgtttagacattaaactaatgttattctactaatacgatttcatgctcaaataaccaaaccttaaat--a 21826756  T
Q  101 agtgattgatattgaacacctagcaagaatatcct--------tgcataccaactaaagccaatcagcctttaaaccacaatatcctacacataacagag 192  Q
    |||  || |||||||| ||||||     |||||||        |||||||||||||||| || |||||||| ||| ||||||||||||||  ||||| ||    
T  21826757 agtagttcatattgaatacctaggtgtgatatcctattatccttgcataccaactaaagtcagtcagccttcaaaacacaatatcctaca--taacaaag 21826854  T
Q  193 acagccttcaaatcatgttctaaagtgaatactagacgataaactcattgaaaaaataaataatatggattaaaatttagaactagtatctcaccatttc 292  Q
    ||| ||||||||||||||||||||   || |||| || ||||||| ||||||||||||||||| ||||||| |||||||||||||  |||||||| |||     
T  21826855 acaaccttcaaatcatgttctaaatcaaacactaaacaataaacttattgaaaaaataaataacatggattcaaatttagaactaacatctcaccttttt 21826954  T
Q  293 aaagacaattgtagtagatgaaatggaatgctattaaatcaatcaaagatataaaacttcaattaggtaaagatgctgaataaaacaaagaaaaggtgtt 392  Q
    | ||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  21826955 agagacaattgtactagatgatatggaatgctattaaataaatcaaagatagaaaacttcaattaggtaaagatgctgcataaaacaaagaaaaggtgtt 21827054  T
Q  393 aattgttattatctaaggtttctaaaaagtttaaatttagtatattgaataatggcccatgagggattcaatcgt 467  Q
    |||||||||||         ||||||||||||||||||||||||||||||||  |  ||||||||||||| ||||    
T  21827055 aattgttatta---------tctaaaaagtttaaatttagtatattgaataactggtcatgagggattcactcgt 21827120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 39602496 - 39602897
Alignment:
Q  1 gaagtaaagaattcacaatcactcttatccttgtttagacat-aaacttatgttattctaagaacatgatttcatgctcaaataaccaaaccttaaaagc 99  Q
    |||||||| ||||||||||||||| ||||||||||||||||| ||||| |||||||||||  ||||||||||||||||||||||| |||||||||||  |    
T  39602496 gaagtaaaaaattcacaatcactcatatccttgtttagacattaaactaatgttattctactaacatgatttcatgctcaaataatcaaaccttaaa--c 39602593  T
Q  100 aagtgattgatattgaacacctagcaagaatatcct--------tgcataccaactaaagccaatcagcctttaaaccacaatatcctacacataacaga 191  Q
    ||||  ||||||||||| ||||||     |||||||        |||||||||||||||| || |||||||| ||| ||||||||||||||  ||||| |    
T  39602594 aagtagttgatattgaatacctaggtgtgatatcctattatccttgcataccaactaaagtcagtcagccttcaaaacacaatatcctaca--taacaaa 39602691  T
Q  192 gacagccttcaaatcatgttctaaagtgaatactagacgataaactcattgaaaaaataaataatatggattaaaatttagaactagtatctcaccattt 291  Q
    |||| ||||||||||||||||||||   || |||| || ||||||| ||||||||||||||||| ||||||| |||||||||||||  |||||||| |||    
T  39602692 gacaaccttcaaatcatgttctaaatcaaacactaaacaataaacttattgaaaaaataaataacatggattcaaatttagaactaacatctcacctttt 39602791  T
Q  292 caaagacaattgtagtagatgaaatggaatgctattaaatcaatcaaagatataaaacttcaattaggtaaagatgctgaataaaacaaagaaaaggtgt 391  Q
     | ||||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |    
T  39602792 tagagacaattgtactagatgatatggaatgctattaaataaatcaaagatagaaaacttcaattaggtaaagatgctgcataaaacaaagaaaaggtat 39602891  T
Q  392 taattg 397  Q
    ||||||    
T  39602892 taattg 39602897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 391
Target Start/End: Complemental strand, 46974301 - 46974220
Alignment:
Q  310 atgaaatggaatgctattaaatcaatcaaagatataaaacttcaattaggtaaagatgctgaataaaacaaagaaaaggtgt 391  Q
    |||||| |||||||||||||||||| |||||| || ||||| || ||| ||| |||||||| || ||||| |||||| ||||    
T  46974301 atgaaaaggaatgctattaaatcaaccaaagacatcaaactccagttaagtatagatgctgcatgaaacagagaaaaagtgt 46974220  T

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Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 183 - 323
Target Start/End: Complemental strand, 38414849 - 38414709
Alignment:
Q  183 cataacagagacagccttcaaatcatgttctaaagtgaatactagacgataaactcattgaaaaaataaataatatggattaaaatttagaactagtatc 282  Q
    ||||||| ||||||||||||||||||||| | ||  |||||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||||||| |    
T  38414849 cataacaaagacagccttcaaatcatgttttgaatcgaatactaaacgataaacacattgaaaaaataaataacatggaataaaatttagaactagtagc 38414750  T
Q  283 tcaccatttcaaagacaattgtagtagatgaaatggaatgc 323  Q
    ||||| ||||  ||||||||||| ||||||||| |||||||    
T  38414749 tcaccttttctgagacaattgtactagatgaaaaggaatgc 38414709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 9010320 - 9010205
Alignment:
Q  219 gaatactagacgataaactcattgaaaaaataaataatatggattaaaatttagaactagtatctcaccatttcaaagacaattgtagtagatgaaatgg 318  Q
    |||||||| ||||||||| |||||||||| ||||||  |||||||||||||||||| ||||| |||||| ||||| |||||| | || ||||||||| ||    
T  9010320 gaatactaaacgataaacacattgaaaaattaaatatcatggattaaaatttagaagtagtagctcaccttttcagagacaactatactagatgaaaagg 9010221  T
Q  319 aatgctattaaatcaa 334  Q
     |||| ||||||||||    
T  9010220 tatgcaattaaatcaa 9010205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 360 - 420
Target Start/End: Complemental strand, 9010203 - 9010143
Alignment:
Q  360 taaagatgctgaataaaacaaagaaaaggtgttaattgttattatctaaggtttctaaaaa 420  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9010203 taaagatgctgcataaaacaaagaaaaggtgttgattgttattatctaaggtttctaaaaa 9010143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 9010531 - 9010472
Alignment:
Q  44 aacttatgttattctaagaacatgatttcatgctcaaataaccaaaccttaaaagcaagt 103  Q
    |||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||    
T  9010531 aacttatgttattccaataacatgattgcatgctcaaataaccaaaccttaaaagcaagt 9010472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 11197921 - 11198009
Alignment:
Q  15 acaatcactcttatccttgtttagacataaacttatgttattctaagaacatgatttcatgctcaaataaccaaaccttaaaagcaagt 103  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  |||||| ||||||||||||||||||||| | |||||||||||    
T  11197921 acaatcactcttatccttgtttagacatagacttatgttattctactaacatggtttcatgctcaaataaccaaatcgtaaaagcaagt 11198009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 23950530 - 23950569
Alignment:
Q  381 agaaaaggtgttaattgttattatctaaggtttctaaaaa 420  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23950530 agaaaaggtgttaattgttattatctaaggtttctaaaaa 23950569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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