View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_32 (Length: 249)
Name: NF10190_low_32
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 55977631 - 55977871
Alignment:
| Q |
1 |
cggccataaagaaactttcaccaactac--gccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagccaccggcggcaggggcg |
98 |
Q |
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| T |
55977631 |
cggccataaagaaactttcaccaactacacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagccaccggcggcagggacg |
55977730 |
T |
|
| Q |
99 |
agttcaagcaatacacaactgaagccaacgttccaaatgaagttttcacttcttactccgataacgccaacggtagaactcaatccttcaactcttacac |
198 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55977731 |
agttcaagcaatgcacaactgaagccaacgttccaaacgaagttttcacttcttactccgataacgccaacggtagaactcaatccttcaactcttacac |
55977830 |
T |
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| Q |
199 |
cgaaaacggtaacggcggtgaccaatctttcacttcctatg |
239 |
Q |
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| T |
55977831 |
cgaaaacggtaacggcggtgaccaatctttcacttcctatg |
55977871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 14865306 - 14865542
Alignment:
| Q |
1 |
cggccataaagaaactttcaccaactacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagccaccggcggcaggggcgag |
100 |
Q |
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||||||||||||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| | |||||| |
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| T |
14865306 |
cggccataaagaaaccttcaccagctacgctaccaacgccaacgtcgccgatcaaagcttccacacttacggcgccggagccaccggcggcggcggcgag |
14865405 |
T |
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| Q |
101 |
ttcaagcaatacacaactgaagccaacgttccaaatgaagttttcacttcttactccgataacgccaacggtagaactcaatccttcaactcttacaccg |
200 |
Q |
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||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| | |
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| T |
14865406 |
ttcaaaacatacacaactgaaaccaacgttccaaacgaagttttcacttcttactccgatagcgccaacggaagaacacaatccttcaactcttacacag |
14865505 |
T |
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| Q |
201 |
aaaacggtaacggcggtgaccaatctttcacttccta |
237 |
Q |
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||||||||||| ||||| | ||||||||||||||||| |
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| T |
14865506 |
aaaacggtaacagcggtcaacaatctttcacttccta |
14865542 |
T |
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