View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_36 (Length: 240)
Name: NF10190_low_36
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 8355442 - 8355261
Alignment:
| Q |
1 |
ctttgtcatcttataatctaatccaacattggaaacatattggaaatcacataaattgaataagttaatc-aaaccctcaaattttagaacataataatt |
99 |
Q |
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| T |
8355442 |
ctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattgaataagttaatcgaaaccctcaaattttagaacataataatt |
8355343 |
T |
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| Q |
100 |
ggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat |
181 |
Q |
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| T |
8355342 |
ggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat |
8355261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 8482900 - 8483076
Alignment:
| Q |
1 |
ctttgtcatcttataatctaatccaacattggaaacatattggaaatcacataaattgaataagttaatcaaaccctcaaattttagaacataataattg |
100 |
Q |
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| T |
8482900 |
ctttgtcatcttagaatctaatccaacattggaaacatattggaaatcacataaattga----gttataagtaccctcaaattttagaacataataattg |
8482995 |
T |
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| Q |
101 |
gataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat |
181 |
Q |
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| T |
8482996 |
aatgagttattctttccagctccgggtagacatcgattggagtcggtgaatgcatctctctctgccacaccatggacatat |
8483076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 8349389 - 8349178
Alignment:
| Q |
1 |
ctttgtcatcttataatctaatccaacattggaaacatattggaaatcacataaattga---ataagttaatcaaaccctcaaattttagaacataataa |
97 |
Q |
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| T |
8349389 |
ctttgtcatcttagtatctaatccaacattggaaaaatattggaaatcacatgaattgagctataagt-------accctcaaattttataacataataa |
8349297 |
T |
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| Q |
98 |
ttggataagttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat-ttcgtgcatattcag |
196 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||| |||| |||||||||||||| |
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| T |
8349296 |
ttggatgagttattctttccagctttgggtagacatcgattgtagtcgctgaatgcatttccatctgccacaccatggatatatcttcgtgcatattcaa |
8349197 |
T |
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| Q |
197 |
cattattacttattttcat |
215 |
Q |
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|||||||||| |||||||| |
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| T |
8349196 |
cattattactcattttcat |
8349178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 178
Target Start/End: Complemental strand, 8350398 - 8350325
Alignment:
| Q |
105 |
agttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggaca |
178 |
Q |
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| T |
8350398 |
agttattctttccagctccagctggacatcgattggagtcgatgaataaagctccatctgccaaaccatggaca |
8350325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 8480715 - 8480788
Alignment:
| Q |
105 |
agttattctttccagctccaggtagacatcgattggagacgctgaatgcatctccatctgccacaccatggaca |
178 |
Q |
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| T |
8480715 |
agttattctttccagctccagctagacatagattggagtctcttaatgaagctccatctgccacaccattgaca |
8480788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 127 - 213
Target Start/End: Original strand, 1169539 - 1169626
Alignment:
| Q |
127 |
tagacatcgattggagacgctgaatgcatctccatctgccacaccatggacatat-ttcgtgcatattcagcattattacttattttc |
213 |
Q |
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| T |
1169539 |
tagagatcgattggagcggctgaatgcatctccatctgccacaccctggacatatcttcgtgtatattcagcattgttattcattttc |
1169626 |
T |
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