View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_37 (Length: 235)
Name: NF10190_low_37
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_37 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4368517 - 4368751
Alignment:
| Q |
1 |
aaaatcacttcagacaatacactaaacttaattcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaacttaagctataatattaa |
100 |
Q |
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| T |
4368517 |
aaaatcacttcagacaatacactaaacttaattcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaacttaagctataatattaa |
4368616 |
T |
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| Q |
101 |
gcttttaacaagtggtatgatgtaaacacccaaaacaaggagtcaaattctagatctttaatctagaatgctttcaaaataaaaacataatcttccattt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368617 |
gcttttcacaagtggtatgatgtaaacacccaaaacaaggagtcaaattctagatctttaatctagaatgctttcaaaataaaaacataatcttccattt |
4368716 |
T |
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| Q |
201 |
aattttcatctccatcttcatcttcatcttcatct |
235 |
Q |
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| T |
4368717 |
aattttcatctccatcttcatcttcatcttcatct |
4368751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 4364128 - 4364357
Alignment:
| Q |
1 |
aaaatcacttcagacaatacactaaacttaattcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaacttaagctataatattaa |
100 |
Q |
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||||| ||| |||||| ||||||| |||||||||||| ||||||| || |||||||||| | ||||||||||||||| |||||||||| | |||||| |
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| T |
4364128 |
aaaattactacagacagtacactacacttaattcaaac-ccataggtaattcatacacaattcataagtcacaaattacaaacttaagcttgagtattaa |
4364226 |
T |
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| Q |
101 |
gcttttaacaagtggtatgatgtaaacacccaaaacaaggagtcaaattctagatctttaatctagaatg-ctttcaaaataaaaac-ataatcttccat |
198 |
Q |
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| T |
4364227 |
gcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactagatatttaaattagaaagtttttcaaattaaaaacaataatcttccat |
4364326 |
T |
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| Q |
199 |
ttaattttcatctccatcttcatcttcatct |
229 |
Q |
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| T |
4364327 |
ttaattttcatcttcatatccatcttcatct |
4364357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 4358752 - 4358917
Alignment:
| Q |
1 |
aaaatcacttcagacaatacactaaacttaa-ttcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaacttaagctataatatt- |
98 |
Q |
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|||||||| || ||| |||||| ||||||| ||| ||| ||||||||||||| ||||||| | |||||||| || |||||||||||||||||| |||| |
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| T |
4358752 |
aaaatcacaacaaacactacactgaacttaaattcgaaacccataggaaagtcgtacacaattcataagtcagaa-ttaacaacttaagctatagtattt |
4358850 |
T |
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| Q |
99 |
aagcttttaacaagtggtatgatgtaaacacccaaaacaaggagtcaaattctagatctttaatcta |
165 |
Q |
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| T |
4358851 |
aagcttttagcaagtgacaagctctaaacacccaaaacaaggagtcaaattctagatatttaatcta |
4358917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 4388401 - 4388491
Alignment:
| Q |
23 |
taaacttaattcaaaatccataggaaagtcatacacaactgataagtcacaaattaacaacttaagctataatattaagcttttaacaagt |
113 |
Q |
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| T |
4388401 |
taaacttaactcaaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaagctatagtattaagcttttaacaagt |
4388491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 7555934 - 7555893
Alignment:
| Q |
50 |
gtcatacacaactgataagtcacaaattaacaacttaagcta |
91 |
Q |
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| T |
7555934 |
gtcatacacaactcataagtcaaaaattaagaacttaagcta |
7555893 |
T |
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