View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_39 (Length: 229)
Name: NF10190_low_39
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 43874974 - 43875167
Alignment:
| Q |
13 |
gtgagatgaaaagaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatgttgtgtgtgatagcatattttataataatt |
112 |
Q |
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| T |
43874974 |
gtgacatgaaaagaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatattgtgtgtgatagcatattttataataatt |
43875073 |
T |
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| Q |
113 |
tggaatatacttggctccatgtaatatgggcagtcaacatcgagagtgtgtatagtggttgagccatcgcaaagagataaaaattgagacaggaat |
208 |
Q |
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| T |
43875074 |
tggaatatacttggctcaatgtaatatcggcagtcaacatc--gagtgtgtatagtggttgagccatcgcaaagagataaaaattgagacaggaat |
43875167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 43867300 - 43867488
Alignment:
| Q |
20 |
gaaaagaagcaagagggaaagaggtcaatacaacaagggatatccattagtaagtgttggatgttgtgtgtgatagcatattttataataatttggaata |
119 |
Q |
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| T |
43867300 |
gaaaagaagcaagagggaaagaggtcaatacgacaagggaaattcattagtaagtgttggacattgtgggaaatagcgtattttataatcatttggaaca |
43867399 |
T |
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| Q |
120 |
tacttggctccatgtaatatgggcagtcaacatcgagagtgtgtatagtggttgagccatcgcaaagagataaaaattgagacaggaat |
208 |
Q |
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| T |
43867400 |
ggctaggctccaagtaatataggcagtgaacatcgagagtgtgtatagtggttgagccatcgcgaagagataaaaagtgagacaggaat |
43867488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 98 - 204
Target Start/End: Original strand, 43863886 - 43863992
Alignment:
| Q |
98 |
tattttataataatttggaatatacttggctccatgtaatatgggcagtcaacatcgagagtgtgtatagtggttgagccatcgcaaagagataaaaatt |
197 |
Q |
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| T |
43863886 |
tattttataatcattttgaataggcttggctccaaggaatatgggcagtaaacatcgagagtgtgtatagtggttgagccatcgcgaagagataaaaatt |
43863985 |
T |
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| Q |
198 |
gagacag |
204 |
Q |
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| T |
43863986 |
gagacag |
43863992 |
T |
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