View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10190_low_4 (Length: 466)

Name: NF10190_low_4
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10190_low_4
NF10190_low_4
[»] chr4 (3 HSPs)
chr4 (6-451)||(27070343-27070789)
chr4 (6-451)||(27150429-27150875)
chr4 (10-62)||(6745668-6745720)
[»] chr7 (5 HSPs)
chr7 (3-66)||(15515337-15515400)
chr7 (3-66)||(15840354-15840417)
chr7 (10-62)||(4435076-4435128)
chr7 (3-66)||(15846410-15846473)
chr7 (3-66)||(15855620-15855683)
[»] chr6 (3 HSPs)
chr6 (117-199)||(4018961-4019044)
chr6 (1-66)||(22817847-22817912)
chr6 (227-314)||(4018837-4018924)
[»] chr8 (1 HSPs)
chr8 (10-62)||(9490319-9490371)
[»] chr1 (2 HSPs)
chr1 (230-314)||(26452410-26452493)
chr1 (1-42)||(26452080-26452121)
[»] chr2 (1 HSPs)
chr2 (152-197)||(13061985-13062030)


Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 451
Target Start/End: Complemental strand, 27070789 - 27070343
Alignment:
Q  6 atattatatattttcattgctgttaaataagtcattggacaaaattgtattaccattaaacttagtacaatacattcatattttttggaaatgagttgca 105  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||     |||||||| ||||||  ||||||||||||||||||||||    
T  27070789 atattatatattttcattgatgttaaataagtcataggacaaaattgtattaccata----ttagtacagtacatttgtattttttggaaatgagttgca 27070694  T
Q  106 gattttttgggaatgagttgcagacaaaattagttatcataattacgaaatacttttctttagaccacatttgaagttatagtagcatcttc-------- 197  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||            
T  27070693 gattttttggaaatgagttgaagacaaaattagttatcataattacgaaatacttttctttagatcacatttgaagttatagtagcatcttcaccatctt 27070594  T
Q  198 -gttggttattaatattttcaacttttactttgaagtaacgcttgaaattgcaacgtataattgatcatgtgaaaccacatacattggaagatatattcc 296  Q
     |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||||    
T  27070593 cgttggttattaatatttttaacttttactgtgaagtaacgcatgaaattgcaacgtataattgataatatgaaagcacatacgttggaagatatattcc 27070494  T
Q  297 aacatgttcaagagattgcacttactcttattagaatttagaatctagaatacataaatcaattttgctacaaataattagagctgcttattacaaattt 396  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||| |||||||||||||||||    
T  27070493 aacatgtttaagagattgcacttactcttattagaatttagaatctagaatac----atcaattttgctacaaataattagaactgcttattacaaattt 27070398  T
Q  397 gaagcttattgcaacaatgaaggtgattacaaatgtaaggcacatatgttgaaag 451  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  27070397 gaagcttattgcaacaatgaaggtgattacaaatgtaaagcaaatatgttgaaag 27070343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 6 - 451
Target Start/End: Complemental strand, 27150875 - 27150429
Alignment:
Q  6 atattatatattttcattgctgttaaataagtcattggacaaaattgtattaccattaaacttagtacaatacattcatattttttggaaatgagttgca 105  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||     |||||||| ||||||  ||||||||||||||||||||||    
T  27150875 atattatatattttcattgatgttaaataagtcataggacaaaattgtattaccata----ttagtacagtacatttgtattttttggaaatgagttgca 27150780  T
Q  106 gattttttgggaatgagttgcagacaaaattagttatcataattacgaaatacttttctttagaccacatttgaagttatagtagcatcttc-------- 197  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||            
T  27150779 gattttttggaaatgagttgaagacaaaattagttatcataattacgaaatacttttctttagatcacatttgaagttatagtagcatcttcaccatctt 27150680  T
Q  198 -gttggttattaatattttcaacttttactttgaagtaacgcttgaaattgcaacgtataattgatcatgtgaaaccacatacattggaagatatattcc 296  Q
     |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||||    
T  27150679 cgttggttattaatatttttaacttttactgtgaagtaacgcatgaaattgcaacgtataattgataatatgaaagcacatacgttggaagatatattcc 27150580  T
Q  297 aacatgttcaagagattgcacttactcttattagaatttagaatctagaatacataaatcaattttgctacaaataattagagctgcttattacaaattt 396  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||| |||||||||||||||||    
T  27150579 aacatgtttaagagattgcacttactcttattagaatttagaatctagaatac----atcaattttgctacaaataattagaactgcttattacaaattt 27150484  T
Q  397 gaagcttattgcaacaatgaaggtgattacaaatgtaaggcacatatgttgaaag 451  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  27150483 gaagcttattgcaacaatgaaggtgattacaaatgtaaagcaaatatgttgaaag 27150429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 6745720 - 6745668
Alignment:
Q  10 tatatattttcattgctgttaaataagtcattggacaaaattgtattaccatt 62  Q
    |||||||||| |||| ||||||||||||||| | | |||||||||||||||||    
T  6745720 tatatatttttattgatgttaaataagtcatggtaaaaaattgtattaccatt 6745668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 15515337 - 15515400
Alignment:
Q  3 gttatattatatattttcattgctgttaaataagtcattggacaaaattgtattaccattaaac 66  Q
    ||||| ||||||||||| |||| ||||||||||||||| | | |||||||||||||||||||||    
T  15515337 gttattttatatatttttattgatgttaaataagtcatagcaaaaaattgtattaccattaaac 15515400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 15840417 - 15840354
Alignment:
Q  3 gttatattatatattttcattgctgttaaataagtcattggacaaaattgtattaccattaaac 66  Q
    ||||| ||||||||||| |||| ||||||||||||||| | | |||||||||||||||||||||    
T  15840417 gttattttatatatttttattgatgttaaataagtcatagcaaaaaattgtattaccattaaac 15840354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 4435128 - 4435076
Alignment:
Q  10 tatatattttcattgctgttaaataagtcattggacaaaattgtattaccatt 62  Q
    |||||||||| |||| ||||||||||||||| | | |||||||||||||||||    
T  4435128 tatatatttttattgatgttaaataagtcatggtaaaaaattgtattaccatt 4435076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 15846473 - 15846410
Alignment:
Q  3 gttatattatatattttcattgctgttaaataagtcattggacaaaattgtattaccattaaac 66  Q
    ||||| ||||||||||| |||| |||||||||| |||| | | |||||||||||||| ||||||    
T  15846473 gttattttatatattttgattgatgttaaataaatcatagcaaaaaattgtattacctttaaac 15846410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 15855683 - 15855620
Alignment:
Q  3 gttatattatatattttcattgctgttaaataagtcattggacaaaattgtattaccattaaac 66  Q
    ||||| ||||||||||| |||| |||||||||| |||| | | |||||||||||||| ||||||    
T  15855683 gttattttatatattttgattgatgttaaataaatcatagcaaaaaattgtattacctttaaac 15855620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 4019044 - 4018961
Alignment:
Q  117 aatgagttgcagacaaaattagttatcataa-ttacgaaatacttttctttagaccacatttgaagttatagtagcatcttcgt 199  Q
    ||||||||||||||||  |||||||| |||| |||| |||||||| ||| ||| ||||||||||||||| | ||||||||||||    
T  4019044 aatgagttgcagacaacgttagttatgataaattacaaaatacttctctataggccacatttgaagttacaatagcatcttcgt 4018961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 22817847 - 22817912
Alignment:
Q  1 aagttatattatatattttcattgctgttaaataagtcattggacaaaattgtattaccattaaac 66  Q
    |||||||||||||| ||||||||| |||||||||| | ||  || |||||| ||||||||||||||    
T  22817847 aagttatattatatgttttcattgatgttaaataatttatatgaaaaaattatattaccattaaac 22817912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 4018924 - 4018837
Alignment:
Q  227 ttgaagtaacgcttgaaattgcaacgtataattgatcatgtgaaaccacatacattggaagatatattccaacatgttcaagagattg 314  Q
    |||||||||| |||||||||||||| ||||||| ||||||| | | |||| || |||  | ||||||||| |||| |||||| |||||    
T  4018924 ttgaagtaactcttgaaattgcaacatataatttatcatgtaagaacacagacgttgacaaatatattccgacattttcaagtgattg 4018837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 9490371 - 9490319
Alignment:
Q  10 tatatattttcattgctgttaaataagtcattggacaaaattgtattaccatt 62  Q
    |||||||||| |||| ||||||||||||||| | | |||||||||||||||||    
T  9490371 tatatatttttattgatgttaaataagtcatggtaaaaaattgtattaccatt 9490319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 26452410 - 26452493
Alignment:
Q  230 aagtaacgcttgaaattgcaacgtataattgatcatgtgaaaccacatacattggaagatatattccaacatgttcaagagattg 314  Q
    ||||||| |||||||||||||| ||||| | | ||||||||| |||  ||||||| | ||||||||||||||||| |||| ||||    
T  26452410 aagtaactcttgaaattgcaacatataactaaccatgtgaaaacaccgacattggca-atatattccaacatgtttaagaaattg 26452493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26452080 - 26452121
Alignment:
Q  1 aagttatattatatattttcattgctgttaaataagtcattg 42  Q
    |||||||||||||||||||||||| | || ||||||||||||    
T  26452080 aagttatattatatattttcattgatattgaataagtcattg 26452121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 13061985 - 13062030
Alignment:
Q  152 gaaatacttttctttagaccacatttgaagttatagtagcatcttc 197  Q
    |||||||||||   |||||||||||||| |||||||||||||||||    
T  13061985 gaaatactttttcatagaccacatttgacgttatagtagcatcttc 13062030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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