View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10190_low_40 (Length: 229)

Name: NF10190_low_40
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10190_low_40
NF10190_low_40
[»] chr2 (1 HSPs)
chr2 (1-211)||(6366723-6366933)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 6366723 - 6366933
Alignment:
Q  1 cagagatattcaagggggaagcaatatgcaagcaaaaatcacggcttctcctagacgaaatgttgcttccaagaggattgcttcctttggacaacattgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6366723 cagagatattcaagggggaagcaatatgcaagcaaaaatcacggcttctcctagacgaaatgttgcttccaagaggattgcttcctttggacaacattgt 6366822  T
Q  101 ggaaatgggtatcaaccgtgtcacaggtttcgtgtggctcaggcaaagacnnnnnnnggtgcaccggttcaatgccattggtcgcacggtttcctttgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||||||||    
T  6366823 ggaaatgggtatcaaccgtgtcacaggtttcgtgtggctcaggcaaagacaaaaaaaggtgcaccggttcaatgccatcggtcgcacggtttcctttgat 6366922  T
Q  201 acagaggtcac 211  Q
    |||||||||||    
T  6366923 acagaggtcac 6366933  T

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