View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_41 (Length: 227)
Name: NF10190_low_41
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_41 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36152817 - 36152591
Alignment:
| Q |
1 |
atgtaagtgccatttctgaattgtcctttatttggtcttgtgtctctctatggtctatttctgctatatctattacaacttcttttgtagaagaatacta |
100 |
Q |
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| T |
36152817 |
atgtaagtgccatttctgaattgtcctttatttggtcttgtgtctctctatggtctatttctgctatatctattacaacttcttttgtagaagaatacta |
36152718 |
T |
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| Q |
101 |
aatatgacctaggaaacaaataaaataattatctacactcatgtatggtcaagagctcttgctctttcttttaagaaaaaattaaataagaaattggatt |
200 |
Q |
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| T |
36152717 |
aatatgacctaggaaacaaataaaataattatctacactcatgtatggtcaagagctcttgctctttcttttaagaaaaaattaaataagaaattggatt |
36152618 |
T |
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| Q |
201 |
gatgcgtattagaatatgtaaatatat |
227 |
Q |
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| T |
36152617 |
gacgcgtattagaatatgtaaatatat |
36152591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 36157696 - 36157524
Alignment:
| Q |
51 |
tggtctatttctgctatatctattacaacttcttttgtagaagaatactaaatatgacct---aggaaacaaataaaataattatctacactcatgtatg |
147 |
Q |
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|||| |||||||||||| |||||| ||||||||||||||||||||||| || | ||||| |||||||||||||| || ||||||||||||||||||| |
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| T |
36157696 |
tggtttatttctgctat--ctattaaaacttcttttgtagaagaatactgaacaagaccttctaggaaacaaataaatta-ttatctacactcatgtatg |
36157600 |
T |
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| Q |
148 |
gtcaagagctcttgctctttcttttaagaaaaaattaaataagaaattggattgatgcgtattagaatatgtaaat |
223 |
Q |
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| T |
36157599 |
gtcaggagttcttgctctttcttgtaagaaaaaataaaataagaaagtgggttgacgcgtattagaatatataaat |
36157524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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