View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10190_low_5 (Length: 451)
Name: NF10190_low_5
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Complemental strand, 22795925 - 22795498
Alignment:
| Q |
15 |
aaatattcatgaaatgaattgtagataataacatagtgtgacattgactat----cttgtaaaagtttcatcattggaatactaaaaagcataccactct |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22795925 |
aaatattcatgaaatgaattgtagataataacatagtgtgacattgactatatatcttgtaaaagtttcatcattggaatactaaaaagcataccactct |
22795826 |
T |
|
| Q |
111 |
ttgtatagttaataagctgcacagtaacttctgtttgattgtcaatagcctgtctaannnnnnncactgttgcaggatcagtttcaggtccttgcaaaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22795825 |
ttgtatagttaataagctgcacagtaacttctgtttgattgtcaatagcctgtctaatttttttcactgttgcaggatcagtttcgggtccttgcaaaaa |
22795726 |
T |
|
| Q |
211 |
cctgtatcatcaaatagcatatataaataaataccataaaattttgtcattatgcaaaaaccttctagattatttccaagtatatatcattttttgagaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22795725 |
cctgtatcatcaaatagcatatataaataaataccataaaattttgtcattatgcaaaaaccttctagattatttccaagtatatatcattttttgagaa |
22795626 |
T |
|
| Q |
311 |
tgacaggacctgcaatttcttcccaagatttcttcacgagaatactctgtaagctctaagaagctatcagatgcaaagatctgaaaaaccaattaaatta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22795625 |
tgacaggacctgcaatttcttcccaagatttcttcacgagaatactctgtaagctctaagaagctatcagatgcaaagatctgaaaaaccaattaaatta |
22795526 |
T |
|
| Q |
411 |
aaacttaaccatcatatatttcgtattc |
438 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
22795525 |
aaacttaaccatcatatatttcgtattc |
22795498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 318 - 398
Target Start/End: Complemental strand, 40960742 - 40960662
Alignment:
| Q |
318 |
acctgcaatttcttcccaagatttcttcacgagaatactctgtaagctctaagaagctatcagatgcaaagatctgaaaaa |
398 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40960742 |
acctgcaatttcttcccaatatttcttcacgactatattctgtaagctctaagaagctatcagatgcaaatatctgaaaaa |
40960662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 213
Target Start/End: Complemental strand, 40961148 - 40961037
Alignment:
| Q |
102 |
taccactctttgtatagttaataagctgcacagtaacttctgtttgattgtcaatagcctgtctaannnnnnncactgttgcaggatcagtttcaggtcc |
201 |
Q |
| |
|
||||| || ||||||| || || || ||||| |||||||| ||||| |||||||| |||| ||||| ||| ||||| ||||||||||| ||||| |
|
|
| T |
40961148 |
taccagtccttgtataattgatcagttgcactgtaacttcggtttggttgtcaattgcctctctaatttttctcacagttgctggatcagtttctggtcc |
40961049 |
T |
|
| Q |
202 |
ttgcaaaaacct |
213 |
Q |
| |
|
||||| |||||| |
|
|
| T |
40961048 |
ttgcagaaacct |
40961037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University