View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10190_low_9 (Length: 385)
Name: NF10190_low_9
Description: NF10190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10190_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 352246 - 351964
Alignment:
| Q |
14 |
gcataggggtgactttatgaaatttcagaatgaaaagggctggagtgcagattctgtttcacaataaaatgatgttgaaaattagctttgagccatttgt |
113 |
Q |
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| T |
352246 |
gcataggggtgactttatgaaatttcagaatgaaaagggctggagtgcagattctgtttcacaataaaatgatgttgaaaattagctttgagccatttgt |
352147 |
T |
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| Q |
114 |
caaggagaactaacaatttcacatcagaatttaacaacattatagactaaatacggcttcgaagaacaatagcaatctgttcaagttctgatacattctt |
213 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
352146 |
caaggagaactaacaatttcgcatcagaatttaacaacattatagactaattacggcttcgaagaacaatagcaatctgttcaagttctgatacattctt |
352047 |
T |
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| Q |
214 |
agctgccaatatattcnnnnnnncatgatactaacatagcactgttattaaaaaggtatagttctaaaaccaatggaaaagca |
296 |
Q |
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| T |
352046 |
agctgccaatatattctttttttcatgatactaacatagtactgttattaaaaaggtatagttctaaaaccaatggaaaagca |
351964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 338956 - 338874
Alignment:
| Q |
290 |
aaaagcaaccagtaatatagtcaaacggccacaatctgggtgacgacataatggtttttaatatttctgaaaccaaaattctg |
372 |
Q |
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| T |
338956 |
aaaagcaatcagtaatatagtcaaacggccacaatctgggtgacgacataatggtttttaatatttctgaaaccaaaattctg |
338874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 10578874 - 10578782
Alignment:
| Q |
135 |
catcagaatttaacaacattatag----actaaatacggcttcgaagaacaatagcaatctgttcaagttctgatacattcttagctgccaat |
223 |
Q |
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| T |
10578874 |
catcagaatttgacaacattatagcgtaaataaatacgggttcgaagaacaatagcaatctgttcaagttctgttacaatcttagctgccaat |
10578782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 10579032 - 10578981
Alignment:
| Q |
14 |
gcataggggtgactttatgaaatttcagaatgaaaagggctggagtgcagat |
65 |
Q |
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| T |
10579032 |
gcataggggtgactttatggaatttcagaatgaaaagggctggagtggagat |
10578981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 24577439 - 24577324
Alignment:
| Q |
14 |
gcataggggtgactttatgaaatttcagaatgaaaagggctggagtgcagattctgtttcacaataaaatgatgttgaaaatt-agctttgagccatttg |
112 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| ||| ||| | |||||| ||||| |
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| T |
24577439 |
gcatgggggtgactttatggaatttcagaatgaaaagggttggagtggagattctgtttcacaataaaatcatgtcgaatattaaaatttgagtcatttc |
24577340 |
T |
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| Q |
113 |
tcaaggagaactaaca |
128 |
Q |
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| T |
24577339 |
ccaaggagaactaaca |
24577324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 24577160 - 24577073
Alignment:
| Q |
135 |
catcagaatttaacaacattatagactaaatacggcttcgaagaacaatagcaatctgttcaagttctgatacattcttagctgccaa |
222 |
Q |
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|||||||| || ||||||||||||| ||||||||| | | ||||||||||||| |||| |||||||| |||| |||||| |||||| |
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| T |
24577160 |
catcagaagttgacaacattatagagtaaatacgggcaccatgaacaatagcaatatgttaaagttctgttacaatcttagttgccaa |
24577073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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