View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_high_16 (Length: 242)
Name: NF10191_high_16
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 54 - 225
Target Start/End: Original strand, 1234462 - 1234634
Alignment:
| Q |
54 |
atattcttgttcttacctgatttacgaggnnnnnnnntccactgaaatctatataacatgttc-ccatgttgttacaatagtattattttttgtcacata |
152 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| || |
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| T |
1234462 |
atattcttgttcttacctcatttacgaggaaaaaaaatccactgaaatctatataaaatgttcaccatgttgttacaatagtattattttttgtcactta |
1234561 |
T |
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| Q |
153 |
gctttctatttccaatttcggtttgcttcgtatgcatggttcatatatgatacaaccattttgtccgatatgc |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1234562 |
gctttctatttccaatttcggtttgcttcgtatgcatggttcatatatgatacaaccattttgtccgatatgc |
1234634 |
T |
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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 41967553 - 41967675
Alignment:
| Q |
54 |
atattcttgttcttacctgatttacgaggnnnnnnnntccactgaaatctatataacatgttccc-atgttgttacaatagtattattttttgtcacata |
152 |
Q |
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|||||||||||||||||| |||||||||| ||| ||||||| |||||| |||||| | ||||| |||||||||||||||||||||||| |
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| T |
41967553 |
atattcttgttcttacctcatttacgaggaaaaaaaatcctctgaaataaatataaaatgttcactatgttattacaatagtattattttttgtca---- |
41967648 |
T |
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| Q |
153 |
gctttctatttccaatttcggtttgctt |
180 |
Q |
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|||||| |||| ||||||||||||||| |
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| T |
41967649 |
-ctttctgtttctaatttcggtttgctt |
41967675 |
T |
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