View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_low_1 (Length: 752)
Name: NF10191_low_1
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 641; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 641; E-Value: 0
Query Start/End: Original strand, 1 - 743
Target Start/End: Original strand, 32853438 - 32854181
Alignment:
| Q |
1 |
tgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853438 |
tgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatt |
32853537 |
T |
|
| Q |
101 |
tttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcattaatcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32853538 |
tttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcattaatcata |
32853637 |
T |
|
| Q |
201 |
gtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttannnnnnnnnnnnnnnnnnnnnnnnnatgccaacaatctctacttgaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32853638 |
gtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctctacttgaat |
32853737 |
T |
|
| Q |
301 |
ggttgggaattttgcatctagtacatctaaagcgacaattttttgattcatgtcctgattttttgcaaa-taaagcaataagaattagaattacctcgta |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
32853738 |
ggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaaataaagcaataagaattagaattacctcgta |
32853837 |
T |
|
| Q |
400 |
tcctttctcctcctcttcctttgtatccataatgccttccatgacctctgttggaaggatgtccacgaaatgagtccccacttccttcttgccgcgagtt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
32853838 |
tcctttctcctcctcttcctttgtatccataatgccttccatgacctctgttggaaggatgtccacgaaatgagtccccacttccttcttgtcgcgagtt |
32853937 |
T |
|
| Q |
500 |
ggaactccggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaat |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
32853938 |
ggaactccggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcagt |
32854037 |
T |
|
| Q |
600 |
tcatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactt |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32854038 |
tcatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccactt |
32854137 |
T |
|
| Q |
700 |
tcctttctggaacttgttctccacaacttttaatttgatgtcca |
743 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32854138 |
tcctttctggaacttgttctccacaacttttaatttgatttcca |
32854181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 624; E-Value: 0
Query Start/End: Original strand, 1 - 743
Target Start/End: Original strand, 37176574 - 37177316
Alignment:
| Q |
1 |
tgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37176574 |
tgaattgtttgttgccttgactagtatgaactgctataaccccctttccttcaattttaacatgttttccatcaccaagttcaacatgagaagaataatt |
37176673 |
T |
|
| Q |
101 |
tttatttagctcttcaaatatggtttgattccctgttacatgattgctgcagccactatctaaaaaccacatctcaccagatttttgatcattaatcata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
37176674 |
tttatttagctcttcaaatatggtttgattccctgttacatgattgctacaaccactatctaaaaaccacatctcaccagattttttatcattaatcata |
37176773 |
T |
|
| Q |
201 |
gtagagaataacttatttgcatcatcttctgcagaaaaattaattccctttannnnnnnnnnnnnnnnnnnnnnnnnatgccaacaatctctacttgaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37176774 |
gtagagaataacttatttgcatcatcttttgcagaaaaattaattccctttattctttcatcattttctttcttcttatgccaacaatctctacttgaat |
37176873 |
T |
|
| Q |
301 |
ggttgggaattttgcatctagtacatctaaagcgacaattttttgattcatgtcctgattttttgcaaataaagcaataagaattagaattacctcgtat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37176874 |
ggttgggaattttgcatctagtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattacctcgtat |
37176973 |
T |
|
| Q |
401 |
cctttctcctcctcttcctttgtatccataatgccttccatgacctctgttggaaggatgtccacgaaatgagtccccacttccttcttgccgcgagttg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37176974 |
cctttctcctcctcttcctttgtatccataatgccttccatgacctatgttggaaggatgtccacgaaatgagtccccacttccttcttgtcgcgagttg |
37177073 |
T |
|
| Q |
501 |
gaactccggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaatt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37177074 |
gaactccggatattcatctttgcttgaaaaacattctccaatggctgattgttgtatctattcactctttcctcatgagcttctaaggaacccatcaatt |
37177173 |
T |
|
| Q |
601 |
catattgtgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccacttt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37177174 |
tatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaacaacatgttcaaatttttgtggaaggcttctcaatattttctcaaccacttt |
37177273 |
T |
|
| Q |
701 |
cctttctggaacttgttctccacaacttttaatttgatgtcca |
743 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37177274 |
cttttctggaacttgttctccacaacttttaatttgatttcca |
37177316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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