View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_low_12 (Length: 342)
Name: NF10191_low_12
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 39522048 - 39522371
Alignment:
| Q |
1 |
agatagagcgttgaattgtgtggaagtgaaaggttgacatagtgagagaggaaaattgtgtttgtttgatgannnnnnnnaagttatgaaattgatgatt |
100 |
Q |
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| T |
39522048 |
agatagagcgttgaattgtgtggaagtgaaaggttgacatggtgagagaggaaaattgtgtttgtttgatgattttttttaagttatgaaattgatgatt |
39522147 |
T |
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| Q |
101 |
gctattcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataagaggaagactttagctgtggactggt |
200 |
Q |
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| T |
39522148 |
gctattcatagaagttggtagaagtagggagtggagaagagaaggggaaccaatgatgaagaagacatagataagaggaagactttagctgtggactggt |
39522247 |
T |
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| Q |
201 |
taagtcgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttgaaagttgatttatcacctaccaatac |
300 |
Q |
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| T |
39522248 |
taagtcgtcacctttgaattttcttatttcttgtttgtttctctctttaattttaaatataaataaaatatttgaaagttgatttatcacctaccaatac |
39522347 |
T |
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| Q |
301 |
catgactatagtataacacactct |
324 |
Q |
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| T |
39522348 |
catgactatagtataacacactct |
39522371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 39581306 - 39581459
Alignment:
| Q |
93 |
tgatgattgctattcatagaagttggtagaagtagggagtgg-agaagagaagggga--accaatgatgaagaagacatagataagaggaagactttagc |
189 |
Q |
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| T |
39581306 |
tgatgactgctattcatagaagttagtagaagtagggagtgggagaagagaagggggggaccaatga---agaagacttgcataagaagaagactctatc |
39581402 |
T |
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| Q |
190 |
tgtggactgg--ttaagtcgtcacctttgaattttcttatttcttgtttgtttctct |
244 |
Q |
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| T |
39581403 |
tgtggactgtgattaagttgtccgctttgaattttctttttccttatttgtttctct |
39581459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 39571647 - 39571722
Alignment:
| Q |
169 |
agataagaggaagactttagctgtggactg--gttaagtcgtcacctttgaattttcttatttcttgtttgtttct |
242 |
Q |
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| T |
39571647 |
agataagaggaagacttaagccgtggagtgtggttaagtcgtcagctttggattttcttcttccttgtttgtttct |
39571722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 39576831 - 39576906
Alignment:
| Q |
169 |
agataagaggaagactttagctgtggactg--gttaagtcgtcacctttgaattttcttatttcttgtttgtttct |
242 |
Q |
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| T |
39576831 |
agataagaggaagacttaagccgtggagtgtggttaagtctttagctttggattttcttcttccttgtttgtttct |
39576906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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