View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10191_low_13 (Length: 339)
Name: NF10191_low_13
Description: NF10191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10191_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 10 - 303
Target Start/End: Original strand, 2433641 - 2433932
Alignment:
| Q |
10 |
caaagggtctaattt-gagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaa |
108 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2433641 |
caaagggtctaattttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaa |
2433740 |
T |
|
| Q |
109 |
ttgttgtactattttgattggggacttccctatggaattactcatgaaaatttggatatgactgaagtctttggtgcttctgtgaaaaggaaaaatggtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2433741 |
ttgttgtactattttgattggggacttccctatggaattactcatgaaaatttggatatgactgaagtgtttggtgcttctgtgaaaaggaaaaatggtc |
2433840 |
T |
|
| Q |
209 |
tattcttaattccaagtctttacaatcatgtacctcttgaataagagttttttaagctacctattgaatgaataaaattagttgaatatcattaa |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
2433841 |
tattcttaattccaagtctttacaatcatgtacctcttgaataagagttttttaaggtacctattgaatgaataaa---agttgaatatcattaa |
2433932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 41647174 - 41647397
Alignment:
| Q |
13 |
agggtctaattt-gagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaattg |
111 |
Q |
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|||||||||||| |||| |||||||||||||||||||| |||||| ||||| |||||| | ||||||| | ||| | ||||| |||||||||| || ||| |
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| T |
41647174 |
agggtctaattttgagttcataccttttggtgcaggaaagagaatgtgtcctggaatctcttttgctgcatctagtatagaacttcctcttgcacagttg |
41647273 |
T |
|
| Q |
112 |
ttgtactattttgattggggacttccctatggaattactcatgaaaatttggatatgactgaagtctttggtgcttctgtgaaaaggaaaaatggtctat |
211 |
Q |
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|||| | |||||||||| ||| |||| ||||| |||||||||||||| || ||||||||| |||||| ||| | |||||||| |||| || ||||| |
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| T |
41647274 |
ctgtattcttttgattggaaactcccctctggaaccactcatgaaaattttgacatgactgaatcctttggcgctacagtgaaaagaaaaagtgatctat |
41647373 |
T |
|
| Q |
212 |
tcttaattccaagtctttacaatc |
235 |
Q |
| |
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| ||||||||| || |||||||| |
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| T |
41647374 |
ttgtaattccaattccttacaatc |
41647397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 41654709 - 41654932
Alignment:
| Q |
13 |
agggtctaattt-gagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaattg |
111 |
Q |
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|||||||||||| |||| |||||||||||||||||||| |||||| ||||| |||||| | ||||||| | ||| | ||||| |||||||||| || ||| |
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| T |
41654709 |
agggtctaattttgagttcataccttttggtgcaggaaagagaatgtgtcctggaatctcttttgctgcatctagtatagaacttcctcttgcacagttg |
41654808 |
T |
|
| Q |
112 |
ttgtactattttgattggggacttccctatggaattactcatgaaaatttggatatgactgaagtctttggtgcttctgtgaaaaggaaaaatggtctat |
211 |
Q |
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|||| | |||||||||| ||| |||| ||||| |||||||||||||| || ||||||||| |||||| ||| | |||||||| |||| || ||||| |
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| T |
41654809 |
ctgtattcttttgattggaaactcccctctggaaccactcatgaaaattttgacatgactgaatcctttggcgctacagtgaaaagaaaaagtgatctat |
41654908 |
T |
|
| Q |
212 |
tcttaattccaagtctttacaatc |
235 |
Q |
| |
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| ||||||||| || |||||||| |
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| T |
41654909 |
ttgtaattccaattccttacaatc |
41654932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 12438345 - 12438179
Alignment:
| Q |
10 |
caaagggtctaattt-gagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttgctgaacctaatttagaatttcctcttgctcaa |
108 |
Q |
| |
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||||||||||||||| |||| |||||||||||||| ||||| ||||| ||||| || ||| || || ||| | | | ||||||||||| ||||| |
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| T |
12438345 |
caaagggtctaatttcgagtttataccttttggtgctggaagaagaatgtgtcccggcatcttgttcgccgaagttggtatggaatttcctctggctcag |
12438246 |
T |
|
| Q |
109 |
ttgttgtactattttgattggggacttccctatggaattactcatgaaaatttggatatgactgaag |
175 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| || |||||||||||| || |||||||||| |
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|
| T |
12438245 |
ttgttgtactattttgattggggacttccctctggaactagtcatgaaaatttagacatgactgaag |
12438179 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 12637029 - 12636975
Alignment:
| Q |
22 |
tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg |
76 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||| |
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| T |
12637029 |
tttgagtacattccttttggtgcaggaagaagaatatgcccaggcatcacatttg |
12636975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 12609933 - 12609879
Alignment:
| Q |
22 |
tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg |
76 |
Q |
| |
|
||||||||||| || |||||||| ||||| |||||||||||||| | |||||||| |
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|
| T |
12609933 |
tttgagtacattccctttggtgctggaagaagaatatgtccaggtagcacatttg |
12609879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 23145948 - 23145894
Alignment:
| Q |
22 |
tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg |
76 |
Q |
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||||||||||| ||||||||||| ||||| |||||||||||||| | |||||||| |
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| T |
23145948 |
tttgagtacattccttttggtgctggaagaagaatatgtccagggagcacatttg |
23145894 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 23036198 - 23036144
Alignment:
| Q |
22 |
tttgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg |
76 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||| ||||| | |||||||| |
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| T |
23036198 |
tttgagtacattccttttggtgccggaagaagaatatgcccagggagcacatttg |
23036144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 23039067 - 23039015
Alignment:
| Q |
24 |
tgagtacataccttttggtgcaggaaggagaatatgtccaggaatcacatttg |
76 |
Q |
| |
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||||||||| ||||||||||| ||||| |||||||| ||||| | |||||||| |
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|
| T |
23039067 |
tgagtacattccttttggtgccggaagaagaatatgcccagggagcacatttg |
23039015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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